View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18550_low_7 (Length: 359)
Name: NF18550_low_7
Description: NF18550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18550_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 1824611 - 1824948
Alignment:
| Q |
1 |
attctggtttcacgttgagaagtgagcactatcaaacctccactagtttacttttnnnnnnnnnnnc---ctgtttagttaccttttcctttttaagtta |
97 |
Q |
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| T |
1824611 |
attctggtttcacgttgagaagtgagcactatcaaacctccactagtttactttttttaaaaaaaaaaatctgtttagttaccttttcctttttaagtta |
1824710 |
T |
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| Q |
98 |
caccattttaaattaattcgatctaatatgcattttagaatataaattatagaagattttatccttatgtgggactctatggggcacaattaggtaaaat |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1824711 |
caccattttaaattaattcgatctaatatgcattttagaatataaattatagaagattttatccttatgtgggactctatggggcacaattaagtaaaat |
1824810 |
T |
|
| Q |
198 |
tctatcagaattatatccttgttgtagttattggttcattgctttgaatctcatatgcaatttctgactccatattttgggtgtgttgtgtgaaaagttc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1824811 |
tctatcagaattatatccttgttgtagttattggttcattgctttgaatctcatatgcaatttctgactccatattttgggtgtgttgtgtgaaaagttc |
1824910 |
T |
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| Q |
298 |
catgtgttgatatttcatactcgacaatattctatagg |
335 |
Q |
| |
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||||||||||||||||||| | |||||||||||||||| |
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| T |
1824911 |
catgtgttgatatttcatatttgacaatattctatagg |
1824948 |
T |
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