View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18550_low_9 (Length: 314)

Name: NF18550_low_9
Description: NF18550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18550_low_9
NF18550_low_9
[»] chr6 (8 HSPs)
chr6 (1-234)||(26847942-26848175)
chr6 (5-114)||(27666597-27666706)
chr6 (147-207)||(27669598-27669658)
chr6 (60-122)||(28790577-28790639)
chr6 (205-238)||(26720068-26720101)
chr6 (83-131)||(27611554-27611603)
chr6 (205-237)||(27310871-27310903)
chr6 (203-235)||(27594033-27594065)
[»] chr1 (1 HSPs)
chr1 (56-114)||(28165515-28165573)
[»] scaffold0419 (1 HSPs)
scaffold0419 (60-122)||(11720-11782)
[»] scaffold0277 (2 HSPs)
scaffold0277 (60-122)||(427-489)
scaffold0277 (60-122)||(9560-9622)


Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 26848175 - 26847942
Alignment:
Q  1 ctgatggaaaaagaaaggttgagttaagggcatcacaatgaataaagagactaggtgatatttagaattttaggcctcgagaatcaaacagcttaataac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26848175 ctgatggaaaaagaaaggttgagttaagggcatcacaatgaataaagagactaggtgatatttagaattttaggcctcgagaatcaaacagcttaataac 26848076  T
Q  101 taatgcatcaaaaaagcgtaatattctctctcccattttaggcctctgcttttgtttggctctacacttttactatgtgagaaacttccttcctacttcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26848075 taatgcatcaaaaaagcgtaatattctctctcccattttaggcctctgcttttgtttggctctacacttttactatgtgagaaacttccttcctacttcc 26847976  T
Q  201 tatcttccatgtaatttctgtaaagcaatgtgaa 234  Q
    ||||||||||||||||||||||||||||||||||    
T  26847975 tatcttccatgtaatttctgtaaagcaatgtgaa 26847942  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 27666597 - 27666706
Alignment:
Q  5 tggaaaaagaaaggttgagttaagggcatcacaatgaataaagagactaggtgatatttagaattttaggcctcgagaatcaaacagcttaataactaat 104  Q
    ||||||||||||||||||||| | ||||||| |||||||  |||||||| ||||||||||||| || ||||||| | |||||||||||||||| ||||||    
T  27666597 tggaaaaagaaaggttgagttgatggcatcagaatgaatcgagagactatgtgatatttagaacttcaggcctcaataatcaaacagcttaatcactaat 27666696  T
Q  105 gcatcaaaaa 114  Q
    |||| |||||    
T  27666697 gcataaaaaa 27666706  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 27669598 - 27669658
Alignment:
Q  147 tgcttttgtttggctctacacttttactatgtgagaaacttccttcctacttcctatcttc 207  Q
    ||||||| ||||||||||||||||||| |||| |||||||||||||||| |||||||||||    
T  27669598 tgcttttatttggctctacacttttaccatgtaagaaacttccttcctatttcctatcttc 27669658  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 122
Target Start/End: Complemental strand, 28790639 - 28790577
Alignment:
Q  60 atttagaattttaggcctcgagaatcaaacagcttaataactaatgcatcaaaaaagcgtaat 122  Q
    |||||||||||||| |  | | ||||||||||||||||||||||||||| |||| ||| ||||    
T  28790639 atttagaattttagactacaaaaatcaaacagcttaataactaatgcattaaaacagcttaat 28790577  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 26720101 - 26720068
Alignment:
Q  205 ttccatgtaatttctgtaaagcaatgtgaatatg 238  Q
    ||||||||||||||||||||||||||||| ||||    
T  26720101 ttccatgtaatttctgtaaagcaatgtgattatg 26720068  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 27611554 - 27611603
Alignment:
Q  83 atcaaacagcttaataa-ctaatgcatcaaaaaagcgtaatattctctct 131  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||| |||||    
T  27611554 atcaaacagcttaataaactaatgcatcaaaagagcttaatattatctct 27611603  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 27310871 - 27310903
Alignment:
Q  205 ttccatgtaatttctgtaaagcaatgtgaatat 237  Q
    ||||||||||| |||||||||||||||||||||    
T  27310871 ttccatgtaatgtctgtaaagcaatgtgaatat 27310903  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 27594033 - 27594065
Alignment:
Q  203 tcttccatgtaatttctgtaaagcaatgtgaat 235  Q
    ||||||||||||||||| |||||||||||||||    
T  27594033 tcttccatgtaatttctttaaagcaatgtgaat 27594065  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 28165515 - 28165573
Alignment:
Q  56 tgatatttagaattttaggcctcgagaatcaaacagcttaataactaatgcatcaaaaa 114  Q
    |||||||||||||||||| ||||   ||||||||| ||||||||| |||||||||||||    
T  28165515 tgatatttagaattttagacctcataaatcaaacaacttaataaccaatgcatcaaaaa 28165573  T

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Target: scaffold0419 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 122
Target Start/End: Complemental strand, 11782 - 11720
Alignment:
Q  60 atttagaattttaggcctcgagaatcaaacagcttaataactaatgcatcaaaaaagcgtaat 122  Q
    |||||||||||||| |  | | ||||||||||||||||||||||||||| |||| ||| ||||    
T  11782 atttagaattttagactacaaaaatcaaacagcttaataactaatgcattaaaacagcttaat 11720  T

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Target: scaffold0277 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 427 - 489
Alignment:
Q  60 atttagaattttaggcctcgagaatcaaacagcttaataactaatgcatcaaaaaagcgtaat 122  Q
    |||||||||||||| |  | | ||||||||||||||||||||||||||| |||| ||| ||||    
T  427 atttagaattttagactacaaaaatcaaacagcttaataactaatgcattaaaacagcttaat 489  T

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Target: scaffold0277; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 9560 - 9622
Alignment:
Q  60 atttagaattttaggcctcgagaatcaaacagcttaataactaatgcatcaaaaaagcgtaat 122  Q
    |||||||||||||| |  | | ||||||||||||||||||||||||||| |||| ||| ||||    
T  9560 atttagaattttagactacaaaaatcaaacagcttaataactaatgcattaaaacagcttaat 9622  T

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