View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18551_high_1 (Length: 1040)
Name: NF18551_high_1
Description: NF18551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18551_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 924; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 924; E-Value: 0
Query Start/End: Original strand, 20 - 1020
Target Start/End: Original strand, 4440664 - 4441664
Alignment:
| Q |
20 |
ataagtgcacctactaacatagacaaattgagtgacggtattgtaacaacgatatcaggtgattctactggcggtgtgcaatcagctagtgattagatga |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4440664 |
ataagtgcacctactaacatagacaaattgagtgacggtattgtaaaaacgatgtcaggtggttctactggcggtgtgcaatcagctagtgattagatga |
4440763 |
T |
|
| Q |
120 |
ggatgttgtctctatctatgacgcattcttcctaattggtgtgtctttgacttttttgtatatgctaactgtagagcttaaggtctcatgtgttttagat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4440764 |
ggatgttgtctctatctatgacgcattcttcctaattggtgtgtctttgacttttttgtatatgctaactgtagagcttaaggtctcatgtgttttagat |
4440863 |
T |
|
| Q |
220 |
agctcgacaaaatgttcaaatttcaattggtgtgcgcttagaaaattttgcaaacatatgtgatgtatttcccaatctagttaagcaaatgctgacacgg |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4440864 |
agctcgacaaaatgttcaaatttcaattggtgtgcgcttagaaaattttgtaaacatatgtgatgtattttccaatctagttaagcaaatgctgacacgg |
4440963 |
T |
|
| Q |
320 |
tgcat--gacatagggctacctgaaaatcaatcatagaatcttggttagatgaaatcagagcgtgctaaaaatcactccgtgatttctttgtatagtcaa |
417 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4440964 |
tgcatatgacatagggctacctgaaaatcaatcatagaatcttggttagatgaaatcagagcttgctaaaaatcactccgtgatttctttgtatagtcaa |
4441063 |
T |
|
| Q |
418 |
caccatcgaatcagagaaaaactgtagttgtagatatgtggagagcagaggttctgtcgtagcaaaggttaggacttcagtggatacttcttcattgata |
517 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441064 |
caccatcgaagcagagaaaaactgtagttgtagatatgtggagagcagaggttctgtcgtagcaaaggttaggacttcagtggatacttcttcattgata |
4441163 |
T |
|
| Q |
518 |
tccatcgcaaatatctgaatatttttaaggagcaattaatctcctaaatctatgaaacacttacacacgccctgtcaaccttgataatactttgcaaata |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4441164 |
tccatcgcaaatatctgaatatttttaaggagcaattaatctcctaaatctatgaaacacttacacacgccctgtcaaccttgataatactttgcaaata |
4441263 |
T |
|
| Q |
618 |
tgtaagcaattgaatgtaaccaaatatgttagtgtctgtgttgttgtccgacaccaaagtgtatatgacttcaatcttaagtatcagtgctaaatagtta |
717 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4441264 |
tgtaagcaattgaatgtaaccaa-tatgttagtgtc-gtgttgttgtccgacaccaaagtgtatatgacttcaatcttaagtatcagtcctaaatagtta |
4441361 |
T |
|
| Q |
718 |
tgaaatgtgatataacattatttgtttgttcctcagtatttgtggtggaattcatctagacgtgcaaagcactacaccaataagtttaccattgctgaag |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
4441362 |
tgaaatgtgatataacattatttgtttgttcctcagtatttgtggtggaattcatctagacgtgcaaagcactacaccaataagtttaccatcgctgaag |
4441461 |
T |
|
| Q |
818 |
atgctgctaattgatgtcctctgtaacatggaagtggcttttgtaaatgcactcctctatggctgcccaaacatcgaagctttggaccttaactttttat |
917 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4441462 |
atgctgctaattgatgtcctcggtaacgtggaagtggcttttgtaaatgcactcctctatggctgcccaaacatcgaagctttggaccttcactttttat |
4441561 |
T |
|
| Q |
918 |
ctgatagcttggagaatgtttgcctcccagcttccttgaaaaggctgaaaatccaaattgataatgactttgggtcttcgcttgaaataaatgcgccaga |
1017 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4441562 |
ctgatagcttggagaatgtttgcctcccagcttccttgaaaaggctgaaaatccaaattgataatgactttgggtcttcgcttgaaataaatgcaccaga |
4441661 |
T |
|
| Q |
1018 |
tct |
1020 |
Q |
| |
|
||| |
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|
| T |
4441662 |
tct |
4441664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 9e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 690 - 969
Target Start/End: Complemental strand, 8383383 - 8383105
Alignment:
| Q |
690 |
aatcttaagtatcagtgctaaatagttatgaaatgtgatataacattatttgtttgttcctcagtatttgtggtggaattcatctagacgtgcaaagcac |
789 |
Q |
| |
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||||||| |||||||||||||||||||||||| |||||||||| || ||| ||||||||| |||| |||| || |||||||||| || | |||||| |
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| T |
8383383 |
aatcttatgtatcagtgctaaatagttatgaa-tgtgatataaaataattcgtttgttccacagtctttgcaatgcaattcatctaaacatacaaagctt |
8383285 |
T |
|
| Q |
790 |
tacaccaataagtttaccattgctgaagatgctgctaattgatgtcctctgtaacatggaagtggcttttgtaaatgcactcctctatggctgcccaaac |
889 |
Q |
| |
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||| ||||||||||||||| |||||||| ||||||||||| || || || | |||||||| || | || |||||||| || | ||||||||||||| |
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|
| T |
8383284 |
tacgacaataagtttaccatcactgaagatactgctaattgacatcttcggttatgtggaagtgcctatggtgaatgcacttctatgtggctgcccaaac |
8383185 |
T |
|
| Q |
890 |
atcgaagctttggaccttaactttttatctgatagcttggagaatgtttgcctcccagcttccttgaaaaggctgaaaat |
969 |
Q |
| |
|
||||||| | | || ||||| |||||| | |||||||||| ||||||||||| ||| || ||||||||||||||||||| |
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|
| T |
8383184 |
atcgaagttctagatcttaaatttttaaccaatagcttggacaatgtttgccttccacctaccttgaaaaggctgaaaat |
8383105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 714 - 969
Target Start/End: Complemental strand, 8367361 - 8367106
Alignment:
| Q |
714 |
gttatgaaatgtgatataacattatttgtttgttcctcagtatttgtggtggaattcatctagacgtgcaaagcactacaccaataagtttaccattgct |
813 |
Q |
| |
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|||||||||| | |||||| || ||||||||||| | ||||||| || ||| |||||||||| || | |||||| |||| ||||||||||||||| || |
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|
| T |
8367361 |
gttatgaaatttcatataatataatttgtttgttacacagtattcgtagtgaaattcatctaaacattcaaagctctacgacaataagtttaccatcact |
8367262 |
T |
|
| Q |
814 |
gaagatgctgctaattgatgtcctctgtaacatggaagtggcttttgtaaatgcactcctctatggctgcccaaacatcgaagctttggaccttaacttt |
913 |
Q |
| |
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|||||| ||||||||||| || || || | || || | || | || |||||||| || | |||||||||||||||||||||| | || ||||| ||| |
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| T |
8367261 |
gaagatactgctaattgacatcttcggttatgtgcaaatccctatggtgaatgcacttctatgtggctgcccaaacatcgaagctctagatcttaaattt |
8367162 |
T |
|
| Q |
914 |
ttatctgatagcttggagaatgtttgcctcccagcttccttgaaaaggctgaaaat |
969 |
Q |
| |
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|| | |||||||||| ||||||| ||| ||| || ||||||||||||||||||| |
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|
| T |
8367161 |
ctaaccaatagcttggacaatgttttccttccacctaccttgaaaaggctgaaaat |
8367106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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