View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18552_high_14 (Length: 300)
Name: NF18552_high_14
Description: NF18552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18552_high_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 3862840 - 3862567
Alignment:
| Q |
18 |
aactatactttgggacgttgctaaccgttgttcagtaagctggaagaaagcaaataagtatttaggatcagccacatgcttctatacggtagtttcatat |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3862840 |
aactatactttgggacgttgctaactgttgttcagtaagctggaagaaagcaaataagtatttaggatcagccacatgcttctatacggtaatttcatat |
3862741 |
T |
|
| Q |
118 |
gggacaaagttatctatttacttctatccagctagaacctgcttctttcctaacccttttcttactcatgagactcctaattacattaacatcttcccat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3862740 |
gggacaaagttatctatttacttctatccagctagaacctgcttctttcctaacccttttcttactcatgagactcctaattacattaacatcttcccat |
3862641 |
T |
|
| Q |
218 |
cttccaaaagatgcatacatattagacaacatcacatagacataatcttcatccctctccagtccaatcacctt |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3862640 |
cttccaaaagatgcatacatattagacaacatcacatagacataatcttcatccctctccagtccaatcacctt |
3862567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University