View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18552_high_23 (Length: 227)

Name: NF18552_high_23
Description: NF18552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18552_high_23
NF18552_high_23
[»] scaffold1320 (1 HSPs)
scaffold1320 (11-164)||(1579-1732)
[»] chr8 (17 HSPs)
chr8 (11-164)||(15078983-15079136)
chr8 (11-164)||(15167138-15167291)
chr8 (12-151)||(15163312-15163446)
chr8 (192-225)||(3456825-3456858)
chr8 (188-227)||(7968940-7968979)
chr8 (182-227)||(4830030-4830076)
chr8 (182-227)||(21557455-21557501)
chr8 (182-223)||(28580970-28581012)
chr8 (182-227)||(7987723-7987768)
chr8 (182-227)||(8837942-8837987)
chr8 (182-226)||(27571842-27571887)
chr8 (198-227)||(32115416-32115445)
chr8 (182-227)||(37570747-37570792)
chr8 (182-226)||(44632178-44632223)
chr8 (183-226)||(7147206-7147250)
chr8 (183-227)||(15079147-15079191)
chr8 (182-225)||(18422446-18422490)
[»] chr6 (7 HSPs)
chr6 (182-226)||(32409172-32409216)
chr6 (187-226)||(25023649-25023688)
chr6 (182-227)||(24623310-24623356)
chr6 (182-225)||(15169955-15169999)
chr6 (182-225)||(15178727-15178771)
chr6 (182-227)||(788888-788934)
chr6 (182-227)||(11456369-11456414)
[»] chr7 (13 HSPs)
chr7 (182-227)||(7388032-7388078)
chr7 (192-227)||(3953463-3953498)
chr7 (182-227)||(27833394-27833440)
chr7 (182-227)||(37325977-37326023)
chr7 (182-227)||(42227798-42227844)
chr7 (182-227)||(44868148-44868194)
chr7 (182-227)||(21136853-21136898)
chr7 (198-227)||(36755036-36755065)
chr7 (198-227)||(36760833-36760862)
chr7 (182-223)||(44717389-44717430)
chr7 (182-225)||(3536247-3536291)
chr7 (195-227)||(21411541-21411573)
chr7 (182-226)||(35001124-35001168)
[»] chr5 (9 HSPs)
chr5 (182-227)||(29695037-29695083)
chr5 (188-226)||(43135193-43135231)
chr5 (182-227)||(20125048-20125093)
chr5 (182-227)||(19647501-19647547)
chr5 (182-227)||(39914923-39914968)
chr5 (198-227)||(39963515-39963544)
chr5 (192-220)||(21052998-21053026)
chr5 (187-227)||(21316904-21316944)
chr5 (195-227)||(24485721-24485753)
[»] chr4 (13 HSPs)
chr4 (182-227)||(21649300-21649346)
chr4 (182-227)||(48159699-48159745)
chr4 (182-227)||(17656787-17656832)
chr4 (198-227)||(22411786-22411815)
chr4 (198-227)||(36071166-36071195)
chr4 (182-227)||(37462133-37462178)
chr4 (187-227)||(50650925-50650966)
chr4 (182-225)||(17948129-17948173)
chr4 (182-225)||(22164262-22164306)
chr4 (184-227)||(36479013-36479057)
chr4 (186-225)||(37005516-37005556)
chr4 (182-225)||(50380829-50380873)
chr4 (192-227)||(56096226-56096262)
[»] chr3 (13 HSPs)
chr3 (182-227)||(5534695-5534740)
chr3 (187-227)||(42269320-42269360)
chr3 (182-225)||(45334213-45334257)
chr3 (182-225)||(23332674-23332717)
chr3 (182-227)||(7464484-7464530)
chr3 (182-227)||(16980347-16980393)
chr3 (182-227)||(25727960-25728006)
chr3 (182-226)||(24521671-24521716)
chr3 (182-225)||(17755145-17755189)
chr3 (182-225)||(19056465-19056509)
chr3 (198-226)||(22843487-22843515)
chr3 (199-227)||(26973383-26973411)
chr3 (183-223)||(49223021-49223061)
[»] chr2 (12 HSPs)
chr2 (182-227)||(3197073-3197118)
chr2 (185-227)||(10991564-10991606)
chr2 (198-227)||(4238781-4238810)
chr2 (187-227)||(20120719-20120760)
chr2 (182-227)||(22267535-22267580)
chr2 (198-227)||(41542993-41543022)
chr2 (190-223)||(41682389-41682422)
chr2 (199-227)||(2429038-2429066)
chr2 (182-225)||(3196584-3196628)
chr2 (182-225)||(24581010-24581054)
chr2 (182-225)||(25395435-25395479)
chr2 (199-227)||(44488021-44488049)
[»] chr1 (13 HSPs)
chr1 (182-227)||(6219856-6219901)
chr1 (182-226)||(13401620-13401665)
chr1 (183-227)||(41926844-41926888)
chr1 (192-227)||(30548095-30548130)
chr1 (183-225)||(3573319-3573361)
chr1 (182-227)||(17917131-17917177)
chr1 (182-227)||(27533265-27533311)
chr1 (182-227)||(43356457-43356503)
chr1 (192-225)||(27023659-27023692)
chr1 (192-227)||(25165095-25165131)
chr1 (198-226)||(28257736-28257764)
chr1 (182-218)||(42267231-42267267)
chr1 (195-227)||(48639021-48639053)
[»] scaffold0011 (1 HSPs)
scaffold0011 (198-226)||(189982-190010)


Alignment Details
Target: scaffold1320 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 11 - 164
Target Start/End: Original strand, 1579 - 1732
Alignment:
Q  11 acatcatcatcagcttcttgcaacttcaaccagtcttctgaaaaagttacaagaaataaatacaaattgcaattcaattccagaaaacattttcttttaa 110  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1579 acatcatcatcagcttcttgcaacttcaaccagtcctctgaaaaagttacaagaaataaatacaaattgcaattcagttccagaaaacattttcttttaa 1678  T
Q  111 tttcgtgttttaactaatagttataaattgtaaaaatatcacacttaaagtcag 164  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  1679 tttcgtgttttcactaatagttataaattgtaaaaatatcacactaaaagtcag 1732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 11 - 164
Target Start/End: Original strand, 15078983 - 15079136
Alignment:
Q  11 acatcatcatcagcttcttgcaacttcaaccagtcttctgaaaaagttacaagaaataaatacaaattgcaattcaattccagaaaacattttcttttaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  15078983 acatcatcatcagcttcttgcaacttcaaccagtcttctgaaaaagttacaagaaataaatacaatttgcaattcagttccagaaaacattttcttttaa 15079082  T
Q  111 tttcgtgttttaactaatagttataaattgtaaaaatatcacacttaaagtcag 164  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  15079083 tttcgtgttttcactaatagttataaattgtaaaaatatcacactaaaagtcag 15079136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 11 - 164
Target Start/End: Complemental strand, 15167291 - 15167138
Alignment:
Q  11 acatcatcatcagcttcttgcaacttcaaccagtcttctgaaaaagttacaagaaataaatacaaattgcaattcaattccagaaaacattttcttttaa 110  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15167291 acatcatcattagcttcttgcaacttcaaccagtcctctgaaaaagttacaagaaataaatacaaattgcaattcagttccagaaaacattttcttttaa 15167192  T
Q  111 tttcgtgttttaactaatagttataaattgtaaaaatatcacacttaaagtcag 164  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  15167191 tttcgtgttttcactaatagttataaattgtaaaaatatcacactaaaagtcag 15167138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 12 - 151
Target Start/End: Complemental strand, 15163446 - 15163312
Alignment:
Q  12 catcatcatcagcttcttgcaacttcaaccagtcttctgaaaaagttacaagaaataaatacaaattgcaattcaattccagaaaacattttcttttaat 111  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||||||  |||||||||||    
T  15163446 catcatcatcagcttcttgcaacttcaaccagtcctctgaaaaagttaaaagaaataaatac-aattgcaattcagttccagaaaac--tttcttttaat 15163350  T
Q  112 ttcgtgttttaactaatagttataaattgtaaaaatatca 151  Q
    ||| |||||| ||||||| |  ||||| ||||||||||||    
T  15163349 ttcatgttttcactaataat--taaatcgtaaaaatatca 15163312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 3456825 - 3456858
Alignment:
Q  192 tttgaacccgaaccttacatatattatgcattgt 225  Q
    ||||||||||||||||||||||||||||||||||    
T  3456825 tttgaacccgaaccttacatatattatgcattgt 3456858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 7968940 - 7968979
Alignment:
Q  188 gggatttgaacccgaaccttacatatattatgcattgtcc 227  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  7968940 gggatttgaacccggaccttgcatatattatgcattgtcc 7968979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 4830076 - 4830030
Alignment:
Q  182 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtcc 227  Q
    |||||||||||| |||||| ||||||| |||||||||||||||||||    
T  4830076 gtggtcgggattcgaaccccgaaccttgcatatattatgcattgtcc 4830030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 21557501 - 21557455
Alignment:
Q  182 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgtcc 227  Q
    |||||||||||| ||||| || |||||||||||||||||||||||||    
T  21557501 gtggtcgggattcgaacctcggaccttacatatattatgcattgtcc 21557455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 28581012 - 28580970
Alignment:
Q  182 gtggtcgggatttgaaccc-gaaccttacatatattatgcatt 223  Q
    ||||||||||||||||||| ||||||||||||| |||||||||    
T  28581012 gtggtcgggatttgaaccccgaaccttacatattttatgcatt 28580970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 7987723 - 7987768
Alignment:
Q  182 gtggtcgggatttgaacccgaaccttacatatattatgcattgtcc 227  Q
    |||||||| ||||||||||| ||||| ||||||||||| |||||||    
T  7987723 gtggtcggaatttgaacccggaccttgcatatattatgtattgtcc 7987768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 8837987 - 8837942
Alignment:
Q  182 gtggtcgggatttgaacccgaaccttacatatattatgcattgtcc 227  Q
    |||||||| ||||||||||| |||||  ||||||||||||||||||    
T  8837987 gtggtcggaatttgaacccggaccttgtatatattatgcattgtcc 8837942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 27571842 - 27571887
Alignment:
Q  182 gtggtcgggatttgaacccgaa-ccttacatatattatgcattgtc 226  Q
    ||||||||||||||||||| || |||| ||||||||||||||||||    
T  27571842 gtggtcgggatttgaaccccaaaccttgcatatattatgcattgtc 27571887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 227
Target Start/End: Original strand, 32115416 - 32115445
Alignment:
Q  198 cccgaaccttacatatattatgcattgtcc 227  Q
    ||||||||||||||||||||||||||||||    
T  32115416 cccgaaccttacatatattatgcattgtcc 32115445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 37570747 - 37570792
Alignment:
Q  182 gtggtcgggatttgaacccgaaccttacatatattatgcattgtcc 227  Q
    ||||||||| ||||||||| |||||||||||| ||||| |||||||    
T  37570747 gtggtcggggtttgaaccccaaccttacatatgttatgtattgtcc 37570792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 44632178 - 44632223
Alignment:
Q  182 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtc 226  Q
    ||||||||| ||||||||| |||||||| |||||||||||||||||    
T  44632178 gtggtcggggtttgaaccccgaaccttatatatattatgcattgtc 44632223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 7147206 - 7147250
Alignment:
Q  183 tggtcgggatttgaacc-cgaaccttacatatattatgcattgtc 226  Q
    |||||||| |||||||| ||||||||||||||||||| |||||||    
T  7147206 tggtcggggtttgaaccacgaaccttacatatattatacattgtc 7147250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 15079147 - 15079191
Alignment:
Q  183 tggtcgggatttgaacccgaaccttacatatattatgcattgtcc 227  Q
    ||||||||||||||| |  |||||| |||||||||||||||||||    
T  15079147 tggtcgggatttgaatctaaaccttgcatatattatgcattgtcc 15079191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 18422446 - 18422490
Alignment:
Q  182 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgt 225  Q
    ||||| ||| |||||| ||||||||||||||||||||||||||||    
T  18422446 gtggttggggtttgaatcccgaaccttacatatattatgcattgt 18422490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 32409172 - 32409216
Alignment:
Q  182 gtggtcgggatttgaacccgaaccttacatatattatgcattgtc 226  Q
    ||||||| | |||||||||||||||||||||||||||||||||||    
T  32409172 gtggtcgaggtttgaacccgaaccttacatatattatgcattgtc 32409216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 25023688 - 25023649
Alignment:
Q  187 cgggatttgaacccgaaccttacatatattatgcattgtc 226  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  25023688 cgggatttgaacccgaactttacatatattatgcattgtc 25023649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 24623310 - 24623356
Alignment:
Q  182 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtcc 227  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||    
T  24623310 gtggtcggggtttgaaccccgaaccttacatatattatgcattgtcc 24623356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 15169999 - 15169955
Alignment:
Q  182 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 225  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||    
T  15169999 gtggtcggggtttgaaccccgaaccttacatatattatgcattgt 15169955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 15178771 - 15178727
Alignment:
Q  182 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 225  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||    
T  15178771 gtggtcggggtttgaaccccgaaccttacatatattatgcattgt 15178727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 788934 - 788888
Alignment:
Q  182 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgtcc 227  Q
    ||||||||| ||||||| ||||||||| |||||||||||||||||||    
T  788934 gtggtcggggtttgaactccgaaccttgcatatattatgcattgtcc 788888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 11456369 - 11456414
Alignment:
Q  182 gtggtcgggatttgaacccgaaccttacatatattatgcattgtcc 227  Q
    |||| |||| |||||||||  |||||||||||||||||||||||||    
T  11456369 gtggccggggtttgaaccccgaccttacatatattatgcattgtcc 11456414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 7388032 - 7388078
Alignment:
Q  182 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgtcc 227  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||    
T  7388032 gtggtcggggtttgaatcccgaaccttacatatattatgcattgtcc 7388078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 227
Target Start/End: Complemental strand, 3953498 - 3953463
Alignment:
Q  192 tttgaacccgaaccttacatatattatgcattgtcc 227  Q
    |||||||||||||||| |||||||||||||||||||    
T  3953498 tttgaacccgaaccttgcatatattatgcattgtcc 3953463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 27833394 - 27833440
Alignment:
Q  182 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtcc 227  Q
    ||||||||| ||||||||| | |||||||||||||||||||||||||    
T  27833394 gtggtcggggtttgaaccccggaccttacatatattatgcattgtcc 27833440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 37325977 - 37326023
Alignment:
Q  182 gtggtcgggatttgaacccgaaccttacatatatt-atgcattgtcc 227  Q
    |||| |||| ||||||||||||||||||||||||| |||||||||||    
T  37325977 gtggccggggtttgaacccgaaccttacatatattaatgcattgtcc 37326023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 42227798 - 42227844
Alignment:
Q  182 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgtcc 227  Q
    ||||||||  |||||||| ||||||||||||||||||||||||||||    
T  42227798 gtggtcggagtttgaacctcgaaccttacatatattatgcattgtcc 42227844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 44868148 - 44868194
Alignment:
Q  182 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgtcc 227  Q
    |||||||| ||||||||| || |||||||||||||||||||||||||    
T  44868148 gtggtcggaatttgaacctcggaccttacatatattatgcattgtcc 44868194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 21136898 - 21136853
Alignment:
Q  182 gtggtcgggatttgaacccgaaccttacatatattatgcattgtcc 227  Q
    ||||||||||||||||||  |||||| |||||||||| ||||||||    
T  21136898 gtggtcgggatttgaacctcaaccttgcatatattatacattgtcc 21136853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 227
Target Start/End: Complemental strand, 36755065 - 36755036
Alignment:
Q  198 cccgaaccttacatatattatgcattgtcc 227  Q
    ||||||||||||||||||||||||||||||    
T  36755065 cccgaaccttacatatattatgcattgtcc 36755036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 227
Target Start/End: Complemental strand, 36760862 - 36760833
Alignment:
Q  198 cccgaaccttacatatattatgcattgtcc 227  Q
    ||||||||||||||||||||||||||||||    
T  36760862 cccgaaccttacatatattatgcattgtcc 36760833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 44717430 - 44717389
Alignment:
Q  182 gtggtcgggatttgaacccgaaccttacatatattatgcatt 223  Q
    ||||||||||||||||| |||| |||||||||||||| ||||    
T  44717430 gtggtcgggatttgaactcgaatcttacatatattatacatt 44717389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 3536247 - 3536291
Alignment:
Q  182 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgt 225  Q
    ||||||||  |||||| ||||||||||||||||||||||||||||    
T  3536247 gtggtcggagtttgaatcccgaaccttacatatattatgcattgt 3536291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 21411573 - 21411541
Alignment:
Q  195 gaacccgaaccttacatatattatgcattgtcc 227  Q
    |||||||||| ||||||||||||||||||||||    
T  21411573 gaacccgaactttacatatattatgcattgtcc 21411541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 35001124 - 35001168
Alignment:
Q  182 gtggtcgggatttgaacccgaaccttacatatattatgcattgtc 226  Q
    ||||||||| ||||||| | ||||||| |||||||||||||||||    
T  35001124 gtggtcggggtttgaactcaaaccttaaatatattatgcattgtc 35001168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 29695083 - 29695037
Alignment:
Q  182 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgtcc 227  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||    
T  29695083 gtggtcggggtttgaaccacgaaccttacatatattatgcattgtcc 29695037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 43135193 - 43135231
Alignment:
Q  188 gggatttgaacccgaaccttacatatattatgcattgtc 226  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  43135193 gggatttgaacccggaccttacatatattatgcattgtc 43135231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 20125093 - 20125048
Alignment:
Q  182 gtggtcgggatttgaacccgaaccttacatatattatgcattgtcc 227  Q
    ||||||||  |||||||||||||||| |||||||||||||||||||    
T  20125093 gtggtcggagtttgaacccgaaccttgcatatattatgcattgtcc 20125048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 19647501 - 19647547
Alignment:
Q  182 gtggtcgggatttgaacccga-accttacatatattatgcattgtcc 227  Q
    ||||||||||||||||||| | |||||||||||||||| ||||||||    
T  19647501 gtggtcgggatttgaaccccagaccttacatatattatacattgtcc 19647547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 39914968 - 39914923
Alignment:
Q  182 gtggtcgggatttgaacccgaaccttacatatattatgcattgtcc 227  Q
    ||||||||| || ||||||| ||||| |||||||||||||||||||    
T  39914968 gtggtcggggttcgaacccggaccttgcatatattatgcattgtcc 39914923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 227
Target Start/End: Complemental strand, 39963544 - 39963515
Alignment:
Q  198 cccgaaccttacatatattatgcattgtcc 227  Q
    ||||||||||||||||||||||||||||||    
T  39963544 cccgaaccttacatatattatgcattgtcc 39963515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 220
Target Start/End: Complemental strand, 21053026 - 21052998
Alignment:
Q  192 tttgaacccgaaccttacatatattatgc 220  Q
    |||||||||||||||||||||||||||||    
T  21053026 tttgaacccgaaccttacatatattatgc 21052998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 21316944 - 21316904
Alignment:
Q  187 cgggatttgaacccgaaccttacatatattatgcattgtcc 227  Q
    |||| |||||||||| ||||| |||||||||||||||||||    
T  21316944 cggggtttgaacccggacctttcatatattatgcattgtcc 21316904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 24485753 - 24485721
Alignment:
Q  195 gaacccgaaccttacatatattatgcattgtcc 227  Q
    ||||||||||||| |||||||||||||||||||    
T  24485753 gaacccgaaccttgcatatattatgcattgtcc 24485721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 21649346 - 21649300
Alignment:
Q  182 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgtcc 227  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||    
T  21649346 gtggtcgggatttgaagcccgatccttacatatattatgcattgtcc 21649300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 48159745 - 48159699
Alignment:
Q  182 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgtcc 227  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||    
T  48159745 gtggtcgggatttgaacttcgaaccttacatatattatgcattgtcc 48159699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 17656787 - 17656832
Alignment:
Q  182 gtggtcgggatttgaacccgaaccttacatatattatgcattgtcc 227  Q
    |||| ||||||| ||||| |||||||||||||||||||||||||||    
T  17656787 gtggccgggattcgaacctgaaccttacatatattatgcattgtcc 17656832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 227
Target Start/End: Complemental strand, 22411815 - 22411786
Alignment:
Q  198 cccgaaccttacatatattatgcattgtcc 227  Q
    ||||||||||||||||||||||||||||||    
T  22411815 cccgaaccttacatatattatgcattgtcc 22411786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 227
Target Start/End: Complemental strand, 36071195 - 36071166
Alignment:
Q  198 cccgaaccttacatatattatgcattgtcc 227  Q
    ||||||||||||||||||||||||||||||    
T  36071195 cccgaaccttacatatattatgcattgtcc 36071166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 37462178 - 37462133
Alignment:
Q  182 gtggtcgggatttgaacccgaaccttacatatattatgcattgtcc 227  Q
    ||||||||| || ||| ||| |||||||||||||||||||||||||    
T  37462178 gtggtcggggttggaatccggaccttacatatattatgcattgtcc 37462133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 50650925 - 50650966
Alignment:
Q  187 cgggatttgaaccc-gaaccttacatatattatgcattgtcc 227  Q
    ||||||| |||||| |||||||||||||||||||||||||||    
T  50650925 cgggattcgaaccctgaaccttacatatattatgcattgtcc 50650966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 17948129 - 17948173
Alignment:
Q  182 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgt 225  Q
    ||||||||| ||||||| ||||||||||||||| |||||||||||    
T  17948129 gtggtcggggtttgaactccgaaccttacatattttatgcattgt 17948173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 22164262 - 22164306
Alignment:
Q  182 gtggtcgggatttgaacccga-accttacatatattatgcattgt 225  Q
    ||||||||| ||||||||| | |||||||||||||||||||||||    
T  22164262 gtggtcggggtttgaaccccagaccttacatatattatgcattgt 22164306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 36479057 - 36479013
Alignment:
Q  184 ggtcgggatttgaacc-cgaaccttacatatattatgcattgtcc 227  Q
    ||||||| || ||||| ||||||||||||||||||||||||||||    
T  36479057 ggtcggggttcgaacctcgaaccttacatatattatgcattgtcc 36479013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 37005516 - 37005556
Alignment:
Q  186 tcgggatttgaaccc-gaaccttacatatattatgcattgt 225  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  37005516 tcgggattcgaaccctgaaccttacatatattatgcattgt 37005556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 50380829 - 50380873
Alignment:
Q  182 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgt 225  Q
    ||||||| ||||||||| ||| |||||||||||||||||||||||    
T  50380829 gtggtcgagatttgaactccggaccttacatatattatgcattgt 50380873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 227
Target Start/End: Complemental strand, 56096262 - 56096226
Alignment:
Q  192 tttgaacc-cgaaccttacatatattatgcattgtcc 227  Q
    |||||||| ||||||||||||||||||||||||||||    
T  56096262 tttgaaccacgaaccttacatatattatgcattgtcc 56096226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 5534695 - 5534740
Alignment:
Q  182 gtggtcgggatttgaacccgaaccttacatatattatgcattgtcc 227  Q
    |||||||||||||||||||||||||| ||||| ||| |||||||||    
T  5534695 gtggtcgggatttgaacccgaaccttgcatattttacgcattgtcc 5534740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 42269360 - 42269320
Alignment:
Q  187 cgggatttgaacccgaaccttacatatattatgcattgtcc 227  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  42269360 cggggtttgaactcgaaccttacatatattatgcattgtcc 42269320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 45334257 - 45334213
Alignment:
Q  182 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 225  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||    
T  45334257 gtggtcgggatttgaaccccgaaccttgcatatattatgcattgt 45334213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 23332717 - 23332674
Alignment:
Q  182 gtggtcgggatttgaacccgaaccttacatatattatgcattgt 225  Q
    ||||||||| |||||||| ||||| |||||||||||||||||||    
T  23332717 gtggtcggggtttgaaccagaaccatacatatattatgcattgt 23332674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 7464484 - 7464530
Alignment:
Q  182 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtcc 227  Q
    ||||||||| ||||||||| | |||||||||||||||||||||||||    
T  7464484 gtggtcggggtttgaaccccggaccttacatatattatgcattgtcc 7464530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 16980347 - 16980393
Alignment:
Q  182 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtcc 227  Q
    ||||||||||||||||||  ||||||| |||||||||||||||||||    
T  16980347 gtggtcgggatttgaaccatgaaccttgcatatattatgcattgtcc 16980393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 25727960 - 25728006
Alignment:
Q  182 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtcc 227  Q
    ||||||||||||||||||| | ||||| |||||||||||||||||||    
T  25727960 gtggtcgggatttgaaccccggaccttgcatatattatgcattgtcc 25728006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 24521716 - 24521671
Alignment:
Q  182 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgtc 226  Q
    ||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  24521716 gtggtcgagatttgaactccgaaccttacatattttatgcattgtc 24521671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 17755189 - 17755145
Alignment:
Q  182 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 225  Q
    |||||||| |||||||||| ||||||||||||||||||| |||||    
T  17755189 gtggtcggaatttgaaccccgaaccttacatatattatgtattgt 17755145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 19056509 - 19056465
Alignment:
Q  182 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 225  Q
    |||||||| |||||||||| ||||||||||||||||||| |||||    
T  19056509 gtggtcggaatttgaaccccgaaccttacatatattatgtattgt 19056465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 226
Target Start/End: Complemental strand, 22843515 - 22843487
Alignment:
Q  198 cccgaaccttacatatattatgcattgtc 226  Q
    |||||||||||||||||||||||||||||    
T  22843515 cccgaaccttacatatattatgcattgtc 22843487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 26973411 - 26973383
Alignment:
Q  199 ccgaaccttacatatattatgcattgtcc 227  Q
    |||||||||||||||||||||||||||||    
T  26973411 ccgaaccttacatatattatgcattgtcc 26973383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 49223021 - 49223061
Alignment:
Q  183 tggtcgggatttgaacccgaaccttacatatattatgcatt 223  Q
    ||||||||||| |||||| |||||| |||||||||||||||    
T  49223021 tggtcgggattcgaaccccaaccttgcatatattatgcatt 49223061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 3197073 - 3197118
Alignment:
Q  182 gtggtcgggatttgaacccgaaccttacatatattatgcattgtcc 227  Q
    ||||||||| |||||| ||||||||| |||||||||||||||||||    
T  3197073 gtggtcggggtttgaatccgaaccttgcatatattatgcattgtcc 3197118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 10991606 - 10991564
Alignment:
Q  185 gtcgggatttgaacccgaaccttacatatattatgcattgtcc 227  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||    
T  10991606 gtcgggattcgaacccggaccttacatatattatgtattgtcc 10991564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 227
Target Start/End: Complemental strand, 4238810 - 4238781
Alignment:
Q  198 cccgaaccttacatatattatgcattgtcc 227  Q
    ||||||||||||||||||||||||||||||    
T  4238810 cccgaaccttacatatattatgcattgtcc 4238781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 20120719 - 20120760
Alignment:
Q  187 cgggatttgaaccc-gaaccttacatatattatgcattgtcc 227  Q
    |||||||||||||| ||||||| |||||||||||||||||||    
T  20120719 cgggatttgaaccccgaaccttgcatatattatgcattgtcc 20120760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 22267580 - 22267535
Alignment:
Q  182 gtggtcgggatttgaacccgaaccttacatatattatgcattgtcc 227  Q
    ||||||||| ||||||| | |||||| |||||||||||||||||||    
T  22267580 gtggtcggggtttgaactcaaaccttgcatatattatgcattgtcc 22267535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 227
Target Start/End: Original strand, 41542993 - 41543022
Alignment:
Q  198 cccgaaccttacatatattatgcattgtcc 227  Q
    ||||||||||||||||||||||||||||||    
T  41542993 cccgaaccttacatatattatgcattgtcc 41543022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 41682389 - 41682422
Alignment:
Q  190 gatttgaacccgaaccttacatatattatgcatt 223  Q
    ||||||||||| ||||||||||||||||||||||    
T  41682389 gatttgaaccctaaccttacatatattatgcatt 41682422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 2429066 - 2429038
Alignment:
Q  199 ccgaaccttacatatattatgcattgtcc 227  Q
    |||||||||||||||||||||||||||||    
T  2429066 ccgaaccttacatatattatgcattgtcc 2429038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 3196628 - 3196584
Alignment:
Q  182 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgt 225  Q
    ||||||| |||||||| | ||||||||||||||||||||||||||    
T  3196628 gtggtcgagatttgaatctcgaaccttacatatattatgcattgt 3196584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 24581010 - 24581054
Alignment:
Q  182 gtggtcgggatttgaacc-cgaaccttacatatattatgcattgt 225  Q
    ||||||||| |||||||| |||||||| |||||||||||||||||    
T  24581010 gtggtcggggtttgaacctcgaaccttgcatatattatgcattgt 24581054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 25395435 - 25395479
Alignment:
Q  182 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgt 225  Q
    ||||||||||||||||||  ||||||| |||||||||||||||||    
T  25395435 gtggtcgggatttgaaccttgaaccttgcatatattatgcattgt 25395479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 44488021 - 44488049
Alignment:
Q  199 ccgaaccttacatatattatgcattgtcc 227  Q
    |||||||||||||||||||||||||||||    
T  44488021 ccgaaccttacatatattatgcattgtcc 44488049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 6219856 - 6219901
Alignment:
Q  182 gtggtcgggatttgaacccgaaccttacatatattatgcattgtcc 227  Q
    |||||| ||||||||||||| ||||||||||||||||| |||||||    
T  6219856 gtggtcaggatttgaacccggaccttacatatattatgtattgtcc 6219901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 13401665 - 13401620
Alignment:
Q  182 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtc 226  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||    
T  13401665 gtggtcggggtttgaaccccgaaccttacatatattatgcattgtc 13401620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 41926888 - 41926844
Alignment:
Q  183 tggtcgggatttgaacccgaaccttacatatattatgcattgtcc 227  Q
    ||||||| ||| ||||||| |||||||||||||||||||||||||    
T  41926888 tggtcggaattcgaacccggaccttacatatattatgcattgtcc 41926844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 30548095 - 30548130
Alignment:
Q  192 tttgaacccgaaccttacatatattatgcattgtcc 227  Q
    |||||||||||||||| |||||||||||||||||||    
T  30548095 tttgaacccgaaccttgcatatattatgcattgtcc 30548130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 3573319 - 3573361
Alignment:
Q  183 tggtcgggatttgaacccgaaccttacatatattatgcattgt 225  Q
    |||||||||||| ||| | ||||||||||||||||||||||||    
T  3573319 tggtcgggatttaaactcaaaccttacatatattatgcattgt 3573361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 17917131 - 17917177
Alignment:
Q  182 gtggtcgggatttgaa-cccgaaccttacatatattatgcattgtcc 227  Q
    ||||||||| |||||| |||||||||||||||| |||||||||||||    
T  17917131 gtggtcggggtttgaatcccgaaccttacatattttatgcattgtcc 17917177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 27533311 - 27533265
Alignment:
Q  182 gtggtcgggatttgaaccc-gaaccttacatatattatgcattgtcc 227  Q
    ||||||||| ||||||||| ||||||| |||||||||||||||||||    
T  27533311 gtggtcggggtttgaaccccgaaccttgcatatattatgcattgtcc 27533265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 43356503 - 43356457
Alignment:
Q  182 gtggtcgggatttgaac-ccgaaccttacatatattatgcattgtcc 227  Q
    ||||||||| ||||||| || ||||||||||||||||||||||||||    
T  43356503 gtggtcggggtttgaactccaaaccttacatatattatgcattgtcc 43356457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 27023659 - 27023692
Alignment:
Q  192 tttgaacccgaaccttacatatattatgcattgt 225  Q
    |||||||||||||||| |||||||||||||||||    
T  27023659 tttgaacccgaaccttgcatatattatgcattgt 27023692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 25165095 - 25165131
Alignment:
Q  192 tttgaacccga-accttacatatattatgcattgtcc 227  Q
    ||||||||||| |||||||||||||||||||||||||    
T  25165095 tttgaacccgagaccttacatatattatgcattgtcc 25165131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 226
Target Start/End: Complemental strand, 28257764 - 28257736
Alignment:
Q  198 cccgaaccttacatatattatgcattgtc 226  Q
    |||||||||||||||||||||||||||||    
T  28257764 cccgaaccttacatatattatgcattgtc 28257736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 42267267 - 42267231
Alignment:
Q  182 gtggtcgggatttgaacccgaaccttacatatattat 218  Q
    |||||||||||||||||| | ||||||||||||||||    
T  42267267 gtggtcgggatttgaacctggaccttacatatattat 42267231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 48639021 - 48639053
Alignment:
Q  195 gaacccgaaccttacatatattatgcattgtcc 227  Q
    |||||| ||||||||||||||||||||||||||    
T  48639021 gaacccaaaccttacatatattatgcattgtcc 48639053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 226
Target Start/End: Original strand, 189982 - 190010
Alignment:
Q  198 cccgaaccttacatatattatgcattgtc 226  Q
    |||||||||||||||||||||||||||||    
T  189982 cccgaaccttacatatattatgcattgtc 190010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University