View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18552_high_27 (Length: 205)
Name: NF18552_high_27
Description: NF18552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18552_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 4e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 10677268 - 10677094
Alignment:
| Q |
15 |
atcagcttgtatatataatacctagccaaggtcattaaattcgatctctttttcttgtcacnnnnnnnncctcttataacatggatgtttatgtgagtag |
114 |
Q |
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| T |
10677268 |
atcagcttgtatatataatacctagccaaggtcattaaattcgatctctttttcttgtcacaaaaaaaacctcttataacatggatgtttatgtgagtag |
10677169 |
T |
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| Q |
115 |
aggaagaccccatttgaggagatcattacctactcaagttgttttcaattatatagtattaagtaacgtccaaat |
189 |
Q |
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| T |
10677168 |
aggaagaccccatttgaggagatcattacctactcaagttgttttcaattatatagtattaagtaacgtccaaat |
10677094 |
T |
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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 10673973 - 10673879
Alignment:
| Q |
95 |
atggatgtttatgtgagtagaggaagaccccatttgaggagatcattacctactcaagttgttttcaattatatagtattaagtaacgtccaaat |
189 |
Q |
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| T |
10673973 |
atggatgttgatgtgagtagaggaagaccccatttgaggagatcgttacatactcaaattgttttcaatcatatagtattaagtaacgtccaaat |
10673879 |
T |
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