View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18552_high_3 (Length: 471)
Name: NF18552_high_3
Description: NF18552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18552_high_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 25 - 471
Target Start/End: Complemental strand, 19451819 - 19451373
Alignment:
| Q |
25 |
gctctgaatgtcatttcagaaatgccgattaaaccagatgctgtaatttggaggagtcttttagatgcttgttataagcaacatgcaagtattgagctaa |
124 |
Q |
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| T |
19451819 |
gctctcaatgtggtttcggaaatgccgattaaaccagatgctgtaatttggaggagtcttttagatgcttgttataagcaacatgcaagtgttgagctaa |
19451720 |
T |
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| Q |
125 |
gtgaagaaatggcaaagcaagtttttgagtcaaacgggagtgtttgtggtggtgcttatgttcttttgtcgaaagtgtatgcttcagctagtaggtggaa |
224 |
Q |
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| T |
19451719 |
gtgaagaaatggcaaagcaaatttttgagtcaaacgggagtgtttgtggtggtgcttatgttcttttgtcgaaagtgtatgcttcagctagtagatggaa |
19451620 |
T |
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| Q |
225 |
tgatgtagggttgcttcgtaagctaatgaatgataagggtgtgagtaaagagcctggttgtagtttaatagagataaatggtgctgctcatgaatttttt |
324 |
Q |
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| T |
19451619 |
tgatgtagggttgcttagaaagctaatgaatgataagggtgtgagtaaaaagcctggttgtagtttaatagagataaacggtgctgctcatgaatttttt |
19451520 |
T |
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| Q |
325 |
gccggagataccaatcatccacaaagtaaagagatatacaagttcatgaatgaaattcaggagaaactagaatctgtagggtatttacctgattattcag |
424 |
Q |
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| T |
19451519 |
gccggagacaccaatcatccacaaagtaaagatatatacaagttcatgaatgaaattcaggagaaactagaatctgtagggtatttacctgattattcag |
19451420 |
T |
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| Q |
425 |
gagcaccattgattgatgagattaatgaagggaaacagaatactatg |
471 |
Q |
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| T |
19451419 |
gagcaccattgattgatgagattaatgaagggaaacagaatactatg |
19451373 |
T |
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