View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18552_high_7 (Length: 397)
Name: NF18552_high_7
Description: NF18552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18552_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 2055085 - 2054855
Alignment:
| Q |
1 |
tttgtaaaaataataatcgactcgacctgtcctaaattataaaatgatataggtgaaaattatctttgattataagtcgtttta--------------ca |
86 |
Q |
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| T |
2055085 |
tttgtaaaaataataatcgactcgatctgtcctaaattataaaatgctataggagaaaattatctttgattataagtcgttttataataacaatataaca |
2054986 |
T |
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| Q |
87 |
tcaatatcactttt-ctgttatacctttaattttttattattcttttaagtacaacaagtaagtaaaacatgttataaatattgcttnnnnnnngatata |
185 |
Q |
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||||||| | |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2054985 |
tcaatataattttttctgttatacctttaattgtttattattcttttaagtacaacaagtaagtaaaacatgttataaatattgcttaaaaaaagatata |
2054886 |
T |
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| Q |
186 |
taccacatacttcacttaaatattttgcaac |
216 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
2054885 |
taccacatacttcacttaaatattttgcaac |
2054855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 2054794 - 2054693
Alignment:
| Q |
277 |
ttgtgataaagtatatatgagtgaatctttgtataaattataataaatattattggcctctannnnnnncttcctgctaagacaatgttttagagtcctc |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
2054794 |
ttgtgataaagtatatatgagtgaatctttgtataaattataataaatattattggcatctatttttttcttcctgctaagacaatgttttagagtcctc |
2054695 |
T |
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| Q |
377 |
tt |
378 |
Q |
| |
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|| |
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| T |
2054694 |
tt |
2054693 |
T |
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