View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18552_low_11 (Length: 355)
Name: NF18552_low_11
Description: NF18552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18552_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 213 - 341
Target Start/End: Original strand, 781270 - 781396
Alignment:
| Q |
213 |
cccttaattaatttgcttatatcttgattttatgttttgcagcatcctaacatggacttctctggtgcaaaattatgttagaaagttagaatggtgctat |
312 |
Q |
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| T |
781270 |
cccttacttaatttgcttac--cttgattttatgttttgcagcatcctaacatggacttctctggtgcaaaattatcttagaaagttagaatgatgctat |
781367 |
T |
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| Q |
313 |
cctcggtgttggtgctgaaagtattacat |
341 |
Q |
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| T |
781368 |
cctcaatgttggtgctgaaagtattacat |
781396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 781063 - 781183
Alignment:
| Q |
14 |
gaaatgatgaaaaaatttatgagtcaggtaagcc---tttgccatctattgacgtaaa----catttgtgagattgtttcggagagtttatggaaacagc |
106 |
Q |
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| T |
781063 |
gaaatgatgaagaaatttatgagtcaggtaagccgcatttgccatctatcgacatatataagcatttgtgagattgttttggagagcttatggaaacagc |
781162 |
T |
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| Q |
107 |
ttgtaacatatgtataaattg |
127 |
Q |
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| T |
781163 |
ttctaacatatgtataaattg |
781183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 769913 - 769869
Alignment:
| Q |
239 |
attttatgttttgcagcatcctaacatggacttctctggtgcaaa |
283 |
Q |
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| T |
769913 |
attttatgttttgcagcatcctaacatggacttctcgggtgcaaa |
769869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 37734124 - 37734070
Alignment:
| Q |
54 |
atctattgacgtaaacatttgtgagattgtttcggagagtttatggaaacagctt |
108 |
Q |
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| T |
37734124 |
atctactgatgtaaacatttgtgaaattgttttggagagtttatggaaatagctt |
37734070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 19305052 - 19304998
Alignment:
| Q |
54 |
atctattgacgtaaacatttgtgagattgtttcggagagtttatggaaacagctt |
108 |
Q |
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| T |
19305052 |
atctattgacataagcatttgtgagattgtgtgggagaatttgtggaaacagctt |
19304998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 11415262 - 11415219
Alignment:
| Q |
72 |
ttgtgagattgtttcggagagtttatggaaacagcttgtaacat |
115 |
Q |
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| T |
11415262 |
ttgtgagattgttttagagagtttatggaaacagcttataacat |
11415219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 43115182 - 43115132
Alignment:
| Q |
54 |
atctattgacgtaaacatttgtgagattgtttcggagagtttatggaaaca |
104 |
Q |
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| T |
43115182 |
atctattgacataatcacttgtgagattgtttggaagagtttatggaaaca |
43115132 |
T |
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