View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18552_low_13 (Length: 338)
Name: NF18552_low_13
Description: NF18552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18552_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 41083 - 41388
Alignment:
| Q |
19 |
ctctattctattctttttaaacattgagagcatagtttagggacattttagttgattttaacggtttagagactaaattgacgaaaaattgatagttttg |
118 |
Q |
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| T |
41083 |
ctctattctattctttttaaacattgagagcatagtttagggacattttagttgattttaacagtttagagactaaattgacgaaaaattgatagttttg |
41182 |
T |
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| Q |
119 |
ttttgggattaaattgactgtttattttctaattttgatttaagatattaacatgaaagacatattttagttgagggccatttcatggactgactgactg |
218 |
Q |
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| T |
41183 |
ttttgggattaaattgactgtttattttctaattttgatttaagatattaacatgaaagacatattttagttgagggccatttcatggactgactgactg |
41282 |
T |
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| Q |
219 |
aagacatatttgatgaccaaactaacgaaggaaatacacgtttgataaccaaattgtatagcaaaaggcacattttgcagataaaatagttacactgtgg |
318 |
Q |
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| T |
41283 |
aagacatatttgatgaccaaactaacgaaggaaatacacgtttgataaccaaattgtatagcaaaaggcacattttgcagataaaatagttacactgtgg |
41382 |
T |
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| Q |
319 |
gtgcct |
324 |
Q |
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|||||| |
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| T |
41383 |
gtgcct |
41388 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 46781727 - 46781682
Alignment:
| Q |
55 |
ttagggacattttagttgattttaacggtttagagactaaattgac |
100 |
Q |
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| T |
46781727 |
ttagggacattttagttgattttaatagattagggactaaattgac |
46781682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 33726525 - 33726477
Alignment:
| Q |
50 |
atagtttagggacattttagttgattttaacggtttagagactaaattg |
98 |
Q |
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| T |
33726525 |
atagtttagggacattttagtttattttaatagtttaatgactaaattg |
33726477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 37160716 - 37160768
Alignment:
| Q |
64 |
ttttagttgattttaacggtttagagactaaattgacgaaaaattgatagttt |
116 |
Q |
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|||||||||||||||| |||||||||||||||| |||| | | ||||||||| |
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| T |
37160716 |
ttttagttgattttaatagtttagagactaaattaacgagagaatgatagttt |
37160768 |
T |
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