View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18552_low_14 (Length: 319)

Name: NF18552_low_14
Description: NF18552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18552_low_14
NF18552_low_14
[»] chr3 (1 HSPs)
chr3 (25-310)||(50304635-50304926)
[»] chr7 (2 HSPs)
chr7 (25-144)||(29511452-29511571)
chr7 (250-311)||(29511571-29511632)
[»] chr2 (4 HSPs)
chr2 (251-305)||(26893716-26893770)
chr2 (251-305)||(26899155-26899209)
chr2 (251-305)||(6852148-6852202)
chr2 (171-247)||(6852222-6852298)
[»] chr1 (2 HSPs)
chr1 (26-72)||(13536661-13536707)
chr1 (171-238)||(13362143-13362210)
[»] chr4 (1 HSPs)
chr4 (171-238)||(50056641-50056708)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 25 - 310
Target Start/End: Complemental strand, 50304926 - 50304635
Alignment:
Q  25 gaggtaaaaatctacacaagttatgccaccgaaatttactcttcatttctctttataaattgaaattttttgcaaactcatattccataaacatgtatat 124  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  50304926 gaggtaaagatctacacaagttatgccaccgaaatttactcttcatttctctctataaattgaaattttttgcaaactcagattccataaacatgtatat 50304827  T
Q  125 tgtcttttttgctggattttgttccttannnnnnnnnnnnccttcgaaagggtattggatacgtgatttcaataaaaatgtttgaaaaatgagaaaataa 224  Q
    ||||||||||||||||||||||| ||||             ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  50304826 tgtcttttttgctggattttgtttcttatttttttttt---cttcgaaagggtattggatacgtgatttcaatagaaatgtttgaaaaatgagagaataa 50304730  T
Q  225 gctatgttgttatg---------gaaattgaacgtatttggagtgatgggtatgaaaggatattgaggaatatgcttcatataatgatgatgatg 310  Q
    ||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  50304729 gctatgttgttatggaaattgaagaaattgaacgtatttggagtgatgggtatgaaaggatattgaggaatatgcttcatatgatgacgatgatg 50304635  T

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Target: chr7 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 29511452 - 29511571
Alignment:
Q  25 gaggtaaaaatctacacaagttatgccaccgaaatttactcttcatttctctttataaattgaaattttttgcaaactcatattccataaacatgtatat 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||| |||||||||||||||||||    
T  29511452 gaggtaaaaatctacacaagttatgccaccgaaatttactcttcatttctctctataaattgattttttttgcaaactcagattccataaacatgtatat 29511551  T
Q  125 tgtcttttttgctggatttt 144  Q
    ||||||||||||||||||||    
T  29511552 tgtcttttttgctggatttt 29511571  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 29511571 - 29511632
Alignment:
Q  250 tatttggagtgatgggtatgaaaggatattgaggaatatgcttcatataatgatgatgatgt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29511571 tatttggagtgatgggtatgaaaggatattgaggaatatgcttcatatgatgatgatgatgt 29511632  T

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Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 26893770 - 26893716
Alignment:
Q  251 atttggagtgatgggtatgaaaggatattgaggaatatgcttcatataatgatga 305  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  26893770 atttggagtgatgggtatgaaaagatattgaggaatatgcttcatatgatgatga 26893716  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 26899209 - 26899155
Alignment:
Q  251 atttggagtgatgggtatgaaaggatattgaggaatatgcttcatataatgatga 305  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  26899209 atttggagtgatgggtatgaaaagatattgaggaatatgcttcatatgatgatga 26899155  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 6852202 - 6852148
Alignment:
Q  251 atttggagtgatgggtatgaaaggatattgaggaatatgcttcatataatgatga 305  Q
    |||||||| |||||| |||||| |||||||||||||||||||||||| |||||||    
T  6852202 atttggagcgatgggcatgaaaagatattgaggaatatgcttcatatgatgatga 6852148  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 6852298 - 6852222
Alignment:
Q  171 aaagggtattggatacgtgatttcaataaaaatgtttgaaaaatgagaaaataagctatgttgttatggaaattgaa 247  Q
    |||||| ||| ||| | |||||||| |||| ||| ||| ||||||||| ||||||| |||||||||||| |||||||    
T  6852298 aaaggggattagatccttgatttcattaaagatgcttggaaaatgagagaataagccatgttgttatgggaattgaa 6852222  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 13536661 - 13536707
Alignment:
Q  26 aggtaaaaatctacacaagttatgccaccgaaatttactcttcattt 72  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||    
T  13536661 aggtaaagatctatacaagttatgccaccgaaatttactcttcattt 13536707  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 13362143 - 13362210
Alignment:
Q  171 aaagggtattggatacgtgatttcaataaaaatgtttgaaaaatgagaaaataagctatgttgttatg 238  Q
    |||||| ||||||| | ||||||||||||||||||||||||||||| | | |||||  ||||||||||    
T  13362143 aaagggaattggatccatgatttcaataaaaatgtttgaaaaatgaaagagtaagccgtgttgttatg 13362210  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 50056641 - 50056708
Alignment:
Q  171 aaagggtattggatacgtgatttcaataaaaatgtttgaaaaatgagaaaataagctatgttgttatg 238  Q
    |||||| ||||||| | |||||||||||||||||||||| |||||| | | |||||| ||||||||||    
T  50056641 aaagggaattggatccatgatttcaataaaaatgtttgacaaatgaaagagtaagctgtgttgttatg 50056708  T

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