View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18552_low_16 (Length: 293)

Name: NF18552_low_16
Description: NF18552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18552_low_16
NF18552_low_16
[»] chr7 (3 HSPs)
chr7 (35-275)||(21597704-21597944)
chr7 (231-275)||(34448603-34448647)
chr7 (231-275)||(33473514-33473558)
[»] chr1 (5 HSPs)
chr1 (238-277)||(44243895-44243934)
chr1 (240-279)||(23045211-23045250)
chr1 (231-278)||(49843455-49843501)
chr1 (236-273)||(37944128-37944165)
chr1 (231-275)||(45139999-45140043)
[»] scaffold0135 (1 HSPs)
scaffold0135 (236-278)||(32632-32674)
[»] chr4 (7 HSPs)
chr4 (236-278)||(9221979-9222021)
chr4 (241-279)||(50380839-50380877)
chr4 (240-277)||(9615490-9615527)
chr4 (231-275)||(8415488-8415532)
chr4 (231-279)||(10308071-10308119)
chr4 (239-275)||(49385307-49385343)
chr4 (231-275)||(50362132-50362176)
[»] chr2 (6 HSPs)
chr2 (231-279)||(20200725-20200773)
chr2 (238-278)||(346124-346164)
chr2 (241-277)||(9718416-9718452)
chr2 (241-277)||(17842715-17842751)
chr2 (231-275)||(24579661-24579705)
chr2 (231-279)||(33567681-33567729)
[»] chr8 (4 HSPs)
chr8 (239-277)||(29652240-29652278)
chr8 (231-275)||(8881299-8881343)
chr8 (231-275)||(19260572-19260616)
chr8 (231-279)||(41603081-41603129)
[»] chr6 (3 HSPs)
chr6 (238-279)||(13496136-13496177)
chr6 (238-279)||(18253339-18253380)
chr6 (231-275)||(28898880-28898924)
[»] scaffold0017 (1 HSPs)
scaffold0017 (231-275)||(35921-35965)
[»] scaffold0009 (1 HSPs)
scaffold0009 (231-275)||(17749-17792)
[»] chr5 (4 HSPs)
chr5 (231-279)||(12909159-12909207)
chr5 (231-279)||(14474854-14474902)
chr5 (231-275)||(20688064-20688108)
chr5 (231-275)||(27219312-27219356)
[»] chr3 (2 HSPs)
chr3 (231-275)||(45431972-45432016)
chr3 (231-275)||(51882193-51882237)


Alignment Details
Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 35 - 275
Target Start/End: Complemental strand, 21597944 - 21597704
Alignment:
Q  35 tttcgagaaataaaacaaaagagaattagatnnnnnnnnnntgataatgtatgacctgtttggatatgtgtttggaaatattcaaaattagactttccat 134  Q
    |||||||||||||||||||||||||||||||          |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21597944 tttcgagaaataaaacaaaagagaattagataaacaaaa--tgataatgtatgacatgtttggatatgtgtttggaaatattcaaaattagactttccat 21597847  T
Q  135 cactttttatttcaaaatcaaactttctaccttaaaagcaagtcgggttaatgtgtcaatatgtttcaatatttaacttggcacaca--nnnnnnnnngt 232  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||           ||    
T  21597846 cactttttatttcaaaatcaaaatttctaccttaaaagcaagttgggttaatgtgtcgatatatttcaatatttaacttggcacacatttttttttttgt 21597747  T
Q  233 ggccagggtttgaactctggaacttacatatattatgcattgt 275  Q
    || |||||||| ||||||| |||||||||||||||||||||||    
T  21597746 ggtcagggtttaaactctgaaacttacatatattatgcattgt 21597704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 34448603 - 34448647
Alignment:
Q  231 gtggccagggtttgaactctggaacttacatatattatgcattgt 275  Q
    |||| |||||||||||| ||||| |||||||||||||||||||||    
T  34448603 gtggtcagggtttgaaccctggaccttacatatattatgcattgt 34448647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 33473514 - 33473558
Alignment:
Q  231 gtggccagggtttgaactctggaacttacatatattatgcattgt 275  Q
    |||||||||||| |||| ||||| ||| |||||||||||||||||    
T  33473514 gtggccagggttggaaccctggaccttgcatatattatgcattgt 33473558  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 44243934 - 44243895
Alignment:
Q  238 gggtttgaactctggaacttacatatattatgcattgttc 277  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  44243934 gggtttgaactctggaccttacatatattatgcattgttc 44243895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 23045250 - 23045211
Alignment:
Q  240 gtttgaactctggaacttacatatattatgcattgttcat 279  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  23045250 gtttgaactccggaccttacatatattatgcattgttcat 23045211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 49843501 - 49843455
Alignment:
Q  231 gtggccagggtttgaactctggaacttacatatattatgcattgttca 278  Q
    |||||||| |||| ||||||| ||||||||||||||||||||||||||    
T  49843501 gtggccagagtttaaactctg-aacttacatatattatgcattgttca 49843455  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 273
Target Start/End: Original strand, 37944128 - 37944165
Alignment:
Q  236 cagggtttgaactctggaacttacatatattatgcatt 273  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  37944128 cagggtttgaaccctggatcttacatatattatgcatt 37944165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 45139999 - 45140043
Alignment:
Q  231 gtggccagggtttgaactctggaacttacatatattatgcattgt 275  Q
    |||||| |||||| ||||||||| ||| |||||||||||||||||    
T  45139999 gtggccggggtttaaactctggaccttgcatatattatgcattgt 45140043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 32674 - 32632
Alignment:
Q  236 cagggtttgaactctggaacttacatatattatgcattgttca 278  Q
    |||||||||| ||||||| ||||||||||||||||||||||||    
T  32674 cagggtttgagctctggatcttacatatattatgcattgttca 32632  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 9222021 - 9221979
Alignment:
Q  236 cagggtttgaactctggaacttacatatattatgcattgttca 278  Q
    |||||||||| ||||||| ||||||||||||||||||||||||    
T  9222021 cagggtttgagctctggatcttacatatattatgcattgttca 9221979  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 50380839 - 50380877
Alignment:
Q  241 tttgaactctggaacttacatatattatgcattgttcat 279  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  50380839 tttgaactccggaccttacatatattatgcattgttcat 50380877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 9615490 - 9615527
Alignment:
Q  240 gtttgaactctggaacttacatatattatgcattgttc 277  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  9615490 gtttgaactccggatcttacatatattatgcattgttc 9615527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 8415488 - 8415532
Alignment:
Q  231 gtggccagggtttgaactctggaacttacatatattatgcattgt 275  Q
    |||| ||||||||||||  |||| |||||||||||||||||||||    
T  8415488 gtggtcagggtttgaaccttggatcttacatatattatgcattgt 8415532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 10308119 - 10308071
Alignment:
Q  231 gtggccagggtttgaactctggaacttacatatattatgcattgttcat 279  Q
    |||| |||||||| ||||| ||||||||||||| ||||||||| |||||    
T  10308119 gtggtcagggtttaaactccggaacttacatattttatgcattattcat 10308071  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 49385307 - 49385343
Alignment:
Q  239 ggtttgaactctggaacttacatatattatgcattgt 275  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  49385307 ggtttgaactccggatcttacatatattatgcattgt 49385343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 50362132 - 50362176
Alignment:
Q  231 gtggccagggtttgaactctggaacttacatatattatgcattgt 275  Q
    ||||||| ||||||||| ||||| ||| |||||||||||||||||    
T  50362132 gtggccaaggtttgaaccctggaccttgcatatattatgcattgt 50362176  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 20200773 - 20200725
Alignment:
Q  231 gtggccagggtttgaactctggaacttacatatattatgcattgttcat 279  Q
    |||||| |||||||||| ||||| ||| |||||||||||||||||||||    
T  20200773 gtggccggggtttgaaccctggaccttgcatatattatgcattgttcat 20200725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 346124 - 346164
Alignment:
Q  238 gggtttgaactctggaacttacatatattatgcattgttca 278  Q
    |||||||||| ||||| ||||||||||||||||||| ||||    
T  346124 gggtttgaaccctggaccttacatatattatgcattattca 346164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 9718452 - 9718416
Alignment:
Q  241 tttgaactctggaacttacatatattatgcattgttc 277  Q
    ||||||||||||||||| || ||||||||||||||||    
T  9718452 tttgaactctggaacttgcaaatattatgcattgttc 9718416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 17842715 - 17842751
Alignment:
Q  241 tttgaactctggaacttacatatattatgcattgttc 277  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  17842715 tttgaactccggatcttacatatattatgcattgttc 17842751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 24579661 - 24579705
Alignment:
Q  231 gtggccagggtttgaactctggaacttacatatattatgcattgt 275  Q
    |||||||| |||||||| ||||| ||| |||||||||||||||||    
T  24579661 gtggccagagtttgaaccctggaccttgcatatattatgcattgt 24579705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 33567729 - 33567681
Alignment:
Q  231 gtggccagggtttgaactctggaacttacatatattatgcattgttcat 279  Q
    |||||| |||||||||| ||||||||| ||||| | |||||||||||||    
T  33567729 gtggccggggtttgaaccctggaacttgcatatttcatgcattgttcat 33567681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 29652278 - 29652240
Alignment:
Q  239 ggtttgaactctggaacttacatatattatgcattgttc 277  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  29652278 ggtttgaactctggaccttgcatatattatgcattgttc 29652240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 8881343 - 8881299
Alignment:
Q  231 gtggccagggtttgaactctggaacttacatatattatgcattgt 275  Q
    |||||| |||||||||| ||||| ||| |||||||||||||||||    
T  8881343 gtggccggggtttgaaccctggaccttgcatatattatgcattgt 8881299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 19260572 - 19260616
Alignment:
Q  231 gtggccagggtttgaactctggaacttacatatattatgcattgt 275  Q
    |||||| |||||||||| | ||| |||||||||||||||||||||    
T  19260572 gtggccggggtttgaaccccggaccttacatatattatgcattgt 19260616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 41603129 - 41603081
Alignment:
Q  231 gtggccagggtttgaactctggaacttacatatattatgcattgttcat 279  Q
    ||||| ||||||||||| |  || |||||||||||||||||||||||||    
T  41603129 gtggcaagggtttgaaccccagaccttacatatattatgcattgttcat 41603081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 13496177 - 13496136
Alignment:
Q  238 gggtttgaactctggaacttacatatattatgcattgttcat 279  Q
    |||||||||||| ||| ||| |||||||||||||||||||||    
T  13496177 gggtttgaactccggaccttgcatatattatgcattgttcat 13496136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 18253339 - 18253380
Alignment:
Q  238 gggtttgaactctggaacttacatatattatgcattgttcat 279  Q
    |||||||||| ||||| ||| |||||||||||||||||||||    
T  18253339 gggtttgaaccctggaccttgcatatattatgcattgttcat 18253380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 28898924 - 28898880
Alignment:
Q  231 gtggccagggtttgaactctggaacttacatatattatgcattgt 275  Q
    |||||| |||||||||||| ||| ||| |||||||||||||||||    
T  28898924 gtggccggggtttgaactccggacctttcatatattatgcattgt 28898880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 35921 - 35965
Alignment:
Q  231 gtggccagggtttgaactctggaacttacatatattatgcattgt 275  Q
    |||||| |||||||||| || ||||||||||||||| ||||||||    
T  35921 gtggcccgggtttgaaccctagaacttacatatattgtgcattgt 35965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 17792 - 17749
Alignment:
Q  231 gtggccagggtttgaactctggaacttacatatattatgcattgt 275  Q
    ||||||||||||||||| ||||| |||| ||||||||||||||||    
T  17792 gtggccagggtttgaac-ctggaccttatatatattatgcattgt 17749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 12909159 - 12909207
Alignment:
Q  231 gtggccagggtttgaactctggaacttacatatattatgcattgttcat 279  Q
    ||||||| ||||| ||| ||| | |||||||||||||||||||||||||    
T  12909159 gtggccaaggtttaaaccctgaaccttacatatattatgcattgttcat 12909207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 14474902 - 14474854
Alignment:
Q  231 gtggccagggtttgaactctggaacttacatatattatgcattgttcat 279  Q
    |||||| |||||||||| ||||| ||| |||||||||||| ||||||||    
T  14474902 gtggccggggtttgaaccctggaccttgcatatattatgcgttgttcat 14474854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 20688108 - 20688064
Alignment:
Q  231 gtggccagggtttgaactctggaacttacatatattatgcattgt 275  Q
    |||||||| |||||||||| ||| ||| |||||||||||||||||    
T  20688108 gtggccagagtttgaactccggaccttgcatatattatgcattgt 20688064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 27219356 - 27219312
Alignment:
Q  231 gtggccagggtttgaactctggaacttacatatattatgcattgt 275  Q
    |||||| |||||||||| ||||| ||||||||||||||| |||||    
T  27219356 gtggccggggtttgaaccctggatcttacatatattatgtattgt 27219312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 45432016 - 45431972
Alignment:
Q  231 gtggccagggtttgaactctggaacttacatatattatgcattgt 275  Q
    ||||||||||||||||| | ||| ||| |||||||||||||||||    
T  45432016 gtggccagggtttgaaccccggaccttgcatatattatgcattgt 45431972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 51882193 - 51882237
Alignment:
Q  231 gtggccagggtttgaactctggaacttacatatattatgcattgt 275  Q
    |||||| |||||||||| ||||| ||| |||||||||||||||||    
T  51882193 gtggccggggtttgaaccctggatcttgcatatattatgcattgt 51882237  T

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