View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18552_low_18 (Length: 266)
Name: NF18552_low_18
Description: NF18552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18552_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 42771204 - 42771446
Alignment:
| Q |
19 |
tatacatcatgaagtggtgggtgaaaacatgtat--aataattgaaacgtgtataacaataacaacatctatcaaatggttttaatttgtcnnnnnnnnc |
116 |
Q |
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| T |
42771204 |
tatacatcatgaagtggtgggtgaaaacatgtattaaataattgaaacgtgtataacaataataacatctatcaaatggttttaatttgtcaaaaaaaac |
42771303 |
T |
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| Q |
117 |
atctatcaaatggttcaaatcatgtctcataaggcacattgcattcaaatgaaagaataaataaattctaaattaattaccagtgtctaaatttccaata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
42771304 |
atctatcaaatggttcaaatcatgtctcataaggcacattgcattcaaatgaaagaataaataaattcaaaattaattaccagtgtctaaattcccaata |
42771403 |
T |
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| Q |
217 |
atgatatcttctcctttggatttgctccacaatgaaccctttg |
259 |
Q |
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| T |
42771404 |
atgatatcttctcctttggatttgctccacaatgaaccctttg |
42771446 |
T |
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