View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18552_low_2 (Length: 544)
Name: NF18552_low_2
Description: NF18552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18552_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 8e-50; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 115 - 270
Target Start/End: Original strand, 43059042 - 43059194
Alignment:
| Q |
115 |
ccaacaacattacatcttatatgtttctattttatctttatatattagaagaaaat---ggtaaaactatgcaatgtaaataatagaaatagtcaaatta |
211 |
Q |
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| T |
43059042 |
ccaacaacatcacatcttatatgttactcttttatctttatatattagaagaaaattatggtaaaactatgcaatgtaaataatagaaatagtcaaatta |
43059141 |
T |
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| Q |
212 |
attatgtcactcattgtgggatggaggaactaggaagtagtattaaaagagaaagcatg |
270 |
Q |
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| T |
43059142 |
----tgtcac--attgtgggatggaggaactcggaagtagtattaaaagagaaagcatg |
43059194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 43058686 - 43058740
Alignment:
| Q |
12 |
atgaactatctaaccttgtgattaagtgactttaaactttagtatattacttctc |
66 |
Q |
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| T |
43058686 |
atgaactatctaacctcgtgattaagtgactttaaactttagtattttacttctc |
43058740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 484 - 530
Target Start/End: Original strand, 43059596 - 43059642
Alignment:
| Q |
484 |
accaaggactaaacaaaactgtttgaaagtcctacaataacttaact |
530 |
Q |
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| T |
43059596 |
accaatgactaaacaaaactgtttgaaagtcctacaataacttaact |
43059642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 299
Target Start/End: Original strand, 43059370 - 43059404
Alignment:
| Q |
265 |
agcatgcatgaagaaggaatgcaaactggttatcg |
299 |
Q |
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| T |
43059370 |
agcatacatgaagaaggaatgcaaactggttatcg |
43059404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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