View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18552_low_23 (Length: 241)

Name: NF18552_low_23
Description: NF18552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18552_low_23
NF18552_low_23
[»] chr6 (10 HSPs)
chr6 (14-233)||(6525656-6525875)
chr6 (14-233)||(6495958-6496177)
chr6 (14-233)||(6462495-6462714)
chr6 (14-233)||(6464618-6464837)
chr6 (14-194)||(6473717-6473897)
chr6 (14-146)||(1842428-1842561)
chr6 (29-230)||(6504765-6504969)
chr6 (50-138)||(6527573-6527661)
chr6 (80-150)||(1846170-1846241)
chr6 (171-230)||(6516944-6517003)
[»] chr7 (3 HSPs)
chr7 (18-66)||(46382872-46382920)
chr7 (154-233)||(46382732-46382811)
chr7 (135-219)||(9666103-9666187)
[»] chr4 (1 HSPs)
chr4 (135-219)||(13537127-13537211)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 6525875 - 6525656
Alignment:
Q  14 gaatgtaggcttgggattcagctcttaccattgcttcctatttctgaagtcttattctctgatgcgaagtatgtgaaggaacttgtggagtggacattac 113  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||  | ||||||||||| ||||||||||||||||||||    
T  6525875 gaatgtaggcttgggattcagctcttaccattgcttccaatttctgaagtcttgttctctgatgttatgtatgtgaagggacttgtggagtggacattac 6525776  T
Q  114 atgctttaaaaagggatggtgttggagagggttggaaggggtttgtatatgccttacaaggaatttatgataatgaaagtgcactgcagaagataagaaa 213  Q
     ||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||| |||||||||||||||    
T  6525775 ctgctttaaaaagggatggtgttgaagagggttggaaggggtttgtttatgccttgcaagggatttatgataatgaaagtgcacagcagaagataagaaa 6525676  T
Q  214 gttaaaaggttttgatgatg 233  Q
    ||| || |||||||||||||    
T  6525675 gttgaagggttttgatgatg 6525656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 6496177 - 6495958
Alignment:
Q  14 gaatgtaggcttgggattcagctcttaccattgcttcctatttctgaagtcttattctctgatg-cgaagtatgtgaaggaacttgtggagtggacatta 112  Q
    ||||||||| ||||  |||||||||||||||||||||||||||||||||| || |||||||||| |||| ||||||||| ||||||| || ||| ||||     
T  6496177 gaatgtagggttggagttcagctcttaccattgcttcctatttctgaagtattgttctctgatgtcgaa-tatgtgaagcaacttgttgaatgggcattg 6496079  T
Q  113 catgctttaaaaagggatggtgttggagagggttggaaggggtttgtatatgccttacaaggaatttatgataatgaaagtgcactgcagaagataagaa 212  Q
    | |||||| ||||| |||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||| |||| |||| || |||| |||||||    
T  6496078 cctgctttgaaaagagatggtgttgaagaaggatggaaagggtttgtatatgccttacaaggaatttatgataaggaaaatgcattgaagaatataagaa 6495979  T
Q  213 agttaaaaggttttgatgatg 233  Q
    | |||||||| ||||||||||    
T  6495978 atttaaaaggatttgatgatg 6495958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 6462495 - 6462714
Alignment:
Q  14 gaatgtaggcttgggattcagctcttaccattgcttcctatttctgaagtcttattctctgatgcgaagtatgtgaaggaacttgtggagtggacattac 113  Q
    |||||||| ||||| |||||||||||||||||| |||||||||||||||| || ||||||||||   | ||||||||| ||||||| || |||||||| |    
T  6462495 gaatgtagacttggaattcagctcttaccattggttcctatttctgaagtattgttctctgatgttgaatatgtgaagcaacttgttgaatggacattgc 6462594  T
Q  114 atgctttaaaaagggatggtgttggagagggttggaaggggtttgtatatgccttacaaggaatttatgataatgaaagtgcactgcagaagataagaaa 213  Q
     |||||| ||||| |||||||||| ||| || ||||| |||||||||||||| |||||||||||||||||||| |||| |||| || |||| ||||||||    
T  6462595 ctgctttgaaaagagatggtgttgaagaaggatggaaagggtttgtatatgctttacaaggaatttatgataaggaaactgcattgaagaatataagaaa 6462694  T
Q  214 gttaaaaggttttgatgatg 233  Q
     |||||||| ||||||||||    
T  6462695 tttaaaaggatttgatgatg 6462714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 6464837 - 6464618
Alignment:
Q  14 gaatgtaggcttgggattcagctcttaccattgcttcctatttctgaagtcttattctctgatgcgaagtatgtgaaggaacttgtggagtggacattac 113  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||  |||   | | ||||||||||||||||||||||||||| |    
T  6464837 gaatgtaggcttgggattcagctcttaccattgcttccaatttctgaattcttattttcaaatgttgattttgtgaaggaacttgtggagtggacattgc 6464738  T
Q  114 atgctttaaaaagggatggtgttggagagggttggaaggggtttgtatatgccttacaaggaatttatgataatgaaagtgcactgcagaagataagaaa 213  Q
     |||||| || ||||| ||||||||||| || ||||| |||||||| ||||||||  ||||| |||||||||||||||||| | || ||||||||||||     
T  6464737 ctgctttgaatagggaaggtgttggagaaggatggaaagggtttgtctatgccttggaaggagtttatgataatgaaagtggattgaagaagataagaag 6464638  T
Q  214 gttaaaaggttttgatgatg 233  Q
     || || |||||||||||||    
T  6464637 cttgaatggttttgatgatg 6464618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 6473717 - 6473897
Alignment:
Q  14 gaatgtaggcttgggattcagctcttaccattgcttcctatttctgaagtcttattctctgatgcgaagtatgtgaaggaacttgtggagtggacattac 113  Q
    |||||||||||||| ||||||||| |||||||| |||||||||||||||| || || || ||||   | ||||||||||||||||||||||||||||| |    
T  6473717 gaatgtaggcttggaattcagctcctaccattgattcctatttctgaagttttgttttcagatgttgattatgtgaaggaacttgtggagtggacattgc 6473816  T
Q  114 atgctttaaaaagggatggtgttggagagggttggaaggggtttgtatatgccttacaaggaatttatgataatgaaagtg 194  Q
     ||||||||| ||||| ||||||| ||| || ||||| || ||||| ||||| || |||||||||||||||||||||||||    
T  6473817 ttgctttaaatagggaaggtgttgaagaaggatggaaaggttttgtctatgcattgcaaggaatttatgataatgaaagtg 6473897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 146
Target Start/End: Original strand, 1842428 - 1842561
Alignment:
Q  14 gaatgtaggcttgggattcagctcttaccattgcttcctatttctgaagtcttattctctgatgcgaagtatgtgaaggaacttgtggagtggacatt-a 112  Q
    |||||| |||| || ||||||||||||||| | || |||||||||||| | || | ||||||||  ||||||||||||| ||||||||||||||||||      
T  1842428 gaatgttggctcggcattcagctcttaccactactccctatttctgaaattttgtcctctgatgttaagtatgtgaagggacttgtggagtggacattgc 1842527  T
Q  113 catgctttaaaaagggatggtgttggagagggtt 146  Q
    | | ||||| ||||||||||||||||||||||||    
T  1842528 ctttctttagaaagggatggtgttggagagggtt 1842561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 6504969 - 6504765
Alignment:
Q  29 attcagctcttaccattgcttcctatttctgaagtcttattctctgatgcgaagtatgtgaaggaacttgtggagtggacattacatgctttaaaaaggg 128  Q
    ||||||||  ||||||||  ||||||||||||||  || || |||||||   | ||||| || || ||||| ||||||||||| | |||||| || ||||    
T  6504969 attcagcttataccattggctcctatttctgaagatttgttttctgatgttgattatgttaaagatcttgttgagtggacattgcctgctttgaataggg 6504870  T
Q  129 a---tggtgttggagagggttggaaggggtttgtatatgccttacaaggaatttatgataatgaaagtgcactgcagaagataagaaagttaaaaggttt 225  Q
    |   |||||||||||| || |||||||| ||  ||||| | ||  |||||||||||||||||||||||||| || ||||||||||||  || || |||||    
T  6504869 aaggtggtgttggagaaggatggaagggattcttatattcattggaaggaatttatgataatgaaagtgcattgaagaagataagaagcttgaatggttt 6504770  T
Q  226 tgatg 230  Q
    |||||    
T  6504769 tgatg 6504765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 6527661 - 6527573
Alignment:
Q  50 cctatttctgaagtcttattctctgatgcgaagtatgtgaaggaacttgtggagtggacattacatgctttaaaaagggatggtgttgg 138  Q
    |||||||||||||| || || |||||||| ||||||||||||||||| || || |||||||||| ||| ||||||||||| ||| ||||    
T  6527661 cctatttctgaagttttgttttctgatgcaaagtatgtgaaggaactagttgaatggacattacctgccttaaaaagggaaggtattgg 6527573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 1846170 - 1846241
Alignment:
Q  80 aagtatgtgaaggaacttgtggagtggacattacatgctttaaaaaggg-atggtgttggagagggttggaa 150  Q
    ||||||||||||| ||||||||||| |||||||| |||||| ||||||| | |||| |||||||||||||||    
T  1846170 aagtatgtgaagggacttgtggagtcgacattacttgctttgaaaagggaacggtgatggagagggttggaa 1846241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 6516944 - 6517003
Alignment:
Q  171 aaggaatttatgataatgaaagtgcactgcagaagataagaaagttaaaaggttttgatg 230  Q
    |||||||||||||||||||||||||| || ||||||||||||  || || ||||||||||    
T  6516944 aaggaatttatgataatgaaagtgcattgaagaagataagaagcttgaatggttttgatg 6517003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 46382920 - 46382872
Alignment:
Q  18 gtaggcttgggattcagctcttaccattgcttcctatttctgaagtctt 66  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||    
T  46382920 gtagccttgggattcagctcttaccattgtttcctatttctgaagtctt 46382872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 46382811 - 46382732
Alignment:
Q  154 gtttgtatatgccttacaaggaatttatgataatgaaagtgcactgcagaagataagaaagttaaaaggttttgatgatg 233  Q
    ||||||||||||||||   | ||||||||||||  || |||||||| | || |||||||||||||| |||||||||||||    
T  46382811 gtttgtatatgccttaagggaaatttatgataacaaaggtgcactgaaaaaaataagaaagttaaagggttttgatgatg 46382732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 9666103 - 9666187
Alignment:
Q  135 ttggagagggttggaaggggtttgtatatgccttacaaggaatttatgataatgaaagtgcactgcagaagataagaaagttaaa 219  Q
    ||||||| ||||||||||| ||| | ||||| || || |||||||||||||| ||  ||||  || |||||||||||||||||||    
T  9666103 ttggagaaggttggaagggttttttgtatgctttgcagggaatttatgataaggatggtgctttggagaagataagaaagttaaa 9666187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 13537127 - 13537211
Alignment:
Q  135 ttggagagggttggaaggggtttgtatatgccttacaaggaatttatgataatgaaagtgcactgcagaagataagaaagttaaa 219  Q
    ||||||| ||||||||||| ||| | ||||| || || |||||||||||||| ||  ||||  || |||||||||||||||||||    
T  13537127 ttggagaaggttggaagggttttttgtatgctttgcagggaatttatgataaggatggtgctttggagaagataagaaagttaaa 13537211  T

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