View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18552_low_4 (Length: 451)
Name: NF18552_low_4
Description: NF18552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18552_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 22 - 307
Target Start/End: Complemental strand, 54913138 - 54912852
Alignment:
| Q |
22 |
gggtgttgaagatttccggcacgacggataaaagcgtcgacgttcatattgtagacacaaaaggaggcaataagatcgttgctacgttgtggaaacaccc |
121 |
Q |
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| T |
54913138 |
gggtgttgaagatttccggcacgacggataaaagcgtcgacgttcatattgtagacacaaaaggaggcaataagatcgttgctacgttgtggaaacaccc |
54913039 |
T |
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| Q |
122 |
ttttgcaaggtttactgtattgtactctcatggtaatgctgctgatttgggtcagatgcgtgacctcttcattgagcttagagctcatcttcgtgtcaat |
221 |
Q |
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| T |
54913038 |
ttttgcaaggtttactatattgtactctcatggtaatgctgctgatttgggtcagatgcgtgacctcttcattgagcttagagctcatcttcgtgtcaat |
54912939 |
T |
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| Q |
222 |
atcatgaggtttcttttcttaat-ccttatatacaattttgcatgcttttattaatacaacagtttttgtctgttaattaataatta |
307 |
Q |
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| T |
54912938 |
atcatgaggtttcttttcttaatcccttatatacaattttgcatgcttttattaatacaacagtttttgtctgttaattaataatta |
54912852 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 11464742 - 11464684
Alignment:
| Q |
144 |
tactctcatggtaatgctgctgatttgggtcagatgcgtgacctcttcattgagcttag |
202 |
Q |
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| T |
11464742 |
tactctcatggcaacgctgctgatctgggtcagatgtatgagcttttcattgagcttag |
11464684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 7338093 - 7338061
Alignment:
| Q |
147 |
tctcatggtaatgctgctgatttgggtcagatg |
179 |
Q |
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| T |
7338093 |
tctcatggaaatgctgctgatttgggtcagatg |
7338061 |
T |
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