View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18552_low_6 (Length: 430)
Name: NF18552_low_6
Description: NF18552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18552_low_6 |
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| [»] scaffold0440 (1 HSPs) |
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Alignment Details
Target: scaffold0440 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 213 - 425
Target Start/End: Complemental strand, 14040 - 13828
Alignment:
| Q |
213 |
ctggtaataaggacattgaatattaagattcagaaatttgatgacacaaaattttgaatgattggtttctttacttatttgagttgtgtttggtcgaaaa |
312 |
Q |
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| T |
14040 |
ctggtaataaggacattgaatattaagattcagaaatttgatgacacaaaattttgaatgattggtttctttacttatttgagttgtgtttggtcgaaaa |
13941 |
T |
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| Q |
313 |
ttttatgatatggtgaggtgatttgatccatagaatatctttgttcagtcacttgatttctgagaaaatcatgacaatgaaaaatggtattatgttttag |
412 |
Q |
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| T |
13940 |
ttttatgatatggtgaggtgatttgatccatagaatatctttgttcagtcacttgatttctgagaaaatcatgacaatgaaaaatggtattatgttttag |
13841 |
T |
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| Q |
413 |
agtttgatgatgt |
425 |
Q |
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| T |
13840 |
agttttatgatgt |
13828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 213 - 313
Target Start/End: Original strand, 25457223 - 25457323
Alignment:
| Q |
213 |
ctggtaataaggacattgaatattaagattcagaaatttgatgacacaaaattttgaatgattggtttctttacttatttgagttgtgtttggtcgaaaa |
312 |
Q |
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| T |
25457223 |
ctggtaataaggacattgaatattaagattcagaaatttgatgacacaaaattttgaatgattggtttctttacttatttgagttgtgtttggtcgaaaa |
25457322 |
T |
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| Q |
313 |
t |
313 |
Q |
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| T |
25457323 |
t |
25457323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 369
Target Start/End: Complemental strand, 32447759 - 32447676
Alignment:
| Q |
286 |
cttatttgagttgtgtttggtcgaaaattttatgatatggtgaggtgatttgatccatagaatatctttgttcagtcacttgat |
369 |
Q |
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| T |
32447759 |
cttatttgagttgtgtttggtttagtattttatgacatgttgaggtgatctgattcatagaatatttttgttcactcacctgat |
32447676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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