View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18552_low_7 (Length: 402)
Name: NF18552_low_7
Description: NF18552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18552_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 107 - 383
Target Start/End: Original strand, 37225351 - 37225627
Alignment:
| Q |
107 |
ataagtctataaccacaaacaatttagaacttaaaacttatgagcaaagcaacctaagaatctacaacatgtggtgatttagactgagcatatggtggat |
206 |
Q |
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| T |
37225351 |
ataagtctataaccacaaacaatttagaacttaaaacttatgagcaaagcaacctaagaatctacaacatgtggtgatttagactgagcatatggtggat |
37225450 |
T |
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| Q |
207 |
ttagagttgcaaggaaaaagcaaaagagagaataagcaaaaacctgaagccagaaggtttatccggtgagtgaaattcaggatgaacaataattttaatg |
306 |
Q |
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| T |
37225451 |
ttagagttgcaaggaaaaagtaaaagagagaataagcaaaaacctgaagccagaaggtttatccggtgagtgaaatttaggatgaacaataattttaatg |
37225550 |
T |
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| Q |
307 |
aaatccctccagaacaagtttttatcccctgaaacattgaagcttgtaccatactttattgaatcatcctttacttc |
383 |
Q |
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| T |
37225551 |
aaatccctccagaacaagtttttatcccctgaaacattgaagcttgtaccatactttattgaatcatccgttacttc |
37225627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 37224728 - 37224817
Alignment:
| Q |
20 |
aacacaactaatcatattcttaaagaaccgtgcacaactcaaatcagatacttataatgagacggatggagtagtacttaagttaacata |
109 |
Q |
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| T |
37224728 |
aacacaactaatcatattcttaaagaaccgtgcacaactcaaatcagatacttataatgagacggatggagtagtacttaagttaacata |
37224817 |
T |
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