View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18552_low_9 (Length: 370)
Name: NF18552_low_9
Description: NF18552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18552_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 39849333 - 39849679
Alignment:
| Q |
1 |
ataagtatattcacttgtgtattttgtatcaaacagcgtaggctgaacatcaatacatacatgttatatgtatcatatgtgattgagttactagtcttcg |
100 |
Q |
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| T |
39849333 |
ataagtatattcacttgtgtattttgtatcaaacagcgtaggctgaacatcaatacttacatgttatatgtatcatatgtgattgagttactagtcttcg |
39849432 |
T |
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| Q |
101 |
gtagaccatttatggttggtttatttgttcatcaaatgcaatgcatcgaatatttactttcctctctactcctgctgaatctgattgtgatgcacattca |
200 |
Q |
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| T |
39849433 |
gtagaccatttatggttggtttatttgttcatcaaatgcaatgcattgaatatttactttcctctctactcctgctgaatctgattgtgatgcacattca |
39849532 |
T |
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| Q |
201 |
tctttgttgtaggtatgatggctaaaatgagcattactacggcatttggattagcttcttcacattccttcaagattcttaagacatgcataaacaacag |
300 |
Q |
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| T |
39849533 |
tctttgttgtaggtatgatggctaaaatgagcattactacggcatttggattagcttcttcacattccttcaagattcttaagacatgcataaacaacag |
39849632 |
T |
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| Q |
301 |
aaaggaagaaaagaaatatggatgcacttaatggatagtgacggtga |
347 |
Q |
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| T |
39849633 |
aaaggaagaaaagaaatatggatgcacttaatggatagtgacggtga |
39849679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 33973436 - 33973168
Alignment:
| Q |
18 |
tgtattttgtatcaaacagcgtaggctgaacatcaatacatacatgttatatgtat--catatgtgattgagttactagt--cttcggtagaccatttat |
113 |
Q |
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| T |
33973436 |
tgtattatgtatcaaacagcgtgggctgcgcatcaatacttacatgttatatatgttccatctgttgtagagttacgtgtgtcttcagtagactacttac |
33973337 |
T |
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| Q |
114 |
ggttggtttatttgttcatcaaatgcaatgcatcgaatatttactttcctctctactcctgctgaatctgattgtgatgcacattcatctt--tgttgta |
211 |
Q |
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| T |
33973336 |
gattggtttatgtgttcatcaaattcaatacatcaagtatttactttcctctctactcctgatgtccctaattgtaatgcacatttattctccacctgta |
33973237 |
T |
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| Q |
212 |
ggtatgatggctaaaatgagcattactacggcatttggattagcttcttcacattccttcaagattctta |
281 |
Q |
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| T |
33973236 |
ggaatgatggataaactgagca-tgctatggcatttggatcagcttcttcacattcattcaagattctta |
33973168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 280
Target Start/End: Original strand, 32201953 - 32202033
Alignment:
| Q |
200 |
atctttgttgtaggtatgatggctaaaatgagcattactacggcatttggattagcttcttcacattccttcaagattctt |
280 |
Q |
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| T |
32201953 |
atctttgttgtaggaatgatggctaaaataagcatcgctatggtatttggattagcttcttcacattcattcaagattctt |
32202033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 3981351 - 3981494
Alignment:
| Q |
18 |
tgtattttgtatcaaacagcgtaggctgaacatcaatacatacatgttatatgtatcatatgtgattgagttactagtcttcggtagaccatttatggtt |
117 |
Q |
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| T |
3981351 |
tgtattatgtatcaaacaacgtaggatgaagataaatacttacatgttatgtgttttatattatgtggagttgcttatcttcagtagactacttatggtt |
3981450 |
T |
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| Q |
118 |
ggtttatttgttcatcaaatgcaatgcatcgaatatttactttc |
161 |
Q |
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| T |
3981451 |
ggtttatttgttaaccatatgcaatgcatctaatatttactttc |
3981494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 299
Target Start/End: Original strand, 3981521 - 3981606
Alignment:
| Q |
215 |
atgatggctaaaatgagcattactacggcatttggattagcttcttcac-attccttcaagattcttaagacatgcataaacaaca |
299 |
Q |
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| T |
3981521 |
atgatggctaaattgagcattgtcatggcatttggagcagcttcttcacaattcattccagaatcttgagaaatgcataaacaaca |
3981606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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