View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18553_high_2 (Length: 409)

Name: NF18553_high_2
Description: NF18553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18553_high_2
NF18553_high_2
[»] chr7 (2 HSPs)
chr7 (167-226)||(30594562-30594620)
chr7 (123-198)||(6891807-6891883)
[»] chr4 (1 HSPs)
chr4 (59-113)||(21348976-21349030)
[»] chr3 (2 HSPs)
chr3 (59-113)||(50723560-50723614)
chr3 (59-113)||(50789235-50789289)
[»] chr8 (1 HSPs)
chr8 (59-113)||(27567877-27567931)
[»] chr1 (1 HSPs)
chr1 (64-113)||(21653419-21653466)


Alignment Details
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 30594620 - 30594562
Alignment:
Q  167 tatggagcaaactgggaaatttcaaagaagcaatattcaaggtaacgaggttttgaatca 226  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||    
T  30594620 tatggagcaaactgggaaatttcaaagaagcaata-tcaaagtaatgaggttttgaatca 30594562  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 6891807 - 6891883
Alignment:
Q  123 ttgtccatattgtcatggtggtgaaaaaattcatga-tgttaagttatggagcaaactgggaaatttcaaagaagca 198  Q
    |||||||| ||||||||||||||| ||||||| ||| | | | ||| | |||||| ||||| |||||||||||||||    
T  6891807 ttgtccatgttgtcatggtggtgacaaaattcctgactttcatgttcttgagcaagctgggcaatttcaaagaagca 6891883  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 21349030 - 21348976
Alignment:
Q  59 gcacaacaaaataggaaaaataacaatgagaaagtactaaacatcatcatttctc 113  Q
    |||||| ||||||||||||||||||||||||||||| ||||||| || |||||||    
T  21349030 gcacaagaaaataggaaaaataacaatgagaaagtattaaacattattatttctc 21348976  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 50723560 - 50723614
Alignment:
Q  59 gcacaacaaaataggaaaaataacaatgagaaagtactaaacatcatcatttctc 113  Q
    |||||| ||||||||||||||||||||||||||||| ||||||| || |||||||    
T  50723560 gcacaagaaaataggaaaaataacaatgagaaagtaataaacattattatttctc 50723614  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 50789289 - 50789235
Alignment:
Q  59 gcacaacaaaataggaaaaataacaatgagaaagtactaaacatcatcatttctc 113  Q
    |||||| ||||||||||||||||||||||||||||| ||||||| || |||||||    
T  50789289 gcacaagaaaataggaaaaataacaatgagaaagtaataaacattattatttctc 50789235  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 27567931 - 27567877
Alignment:
Q  59 gcacaacaaaataggaaaaataacaa-tgagaaagtactaaacatcatcatttctc 113  Q
    |||||| |||||||||||| |||||| |||||||||||||||||||||||||||||    
T  27567931 gcacaagaaaataggaaaa-taacaaatgagaaagtactaaacatcatcatttctc 27567877  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 21653419 - 21653466
Alignment:
Q  64 acaaaataggaaaaataacaatgagaaagtactaaacatcatcatttctc 113  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  21653419 acaaaataggaaaaataacaatgag-aagtactaaa-atcatcatttctc 21653466  T

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