View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18553_high_3 (Length: 289)
Name: NF18553_high_3
Description: NF18553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18553_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 93 - 271
Target Start/End: Complemental strand, 25645266 - 25645097
Alignment:
| Q |
93 |
attgggttagtttctaagttcagtatatatattta----tttagtaaaacaaaaagggagggtctaaaaatattttacaaaatgatattaatttaaaccg |
188 |
Q |
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| T |
25645266 |
attgggttagtttctaagttgagtatatatatttatttatttagtaaaacaa-------------aaaaatattttacaaaaagatattaatttaaaccg |
25645180 |
T |
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| Q |
189 |
gtagaaacttaatataaaaaattggagactcctaatatgaatttgagttttatttcaagttttcaacgatgttctccttgaat |
271 |
Q |
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| T |
25645179 |
gtagaaacttaatataaaaaattggagacgcctaatatgaatttgagttttatttcaagttttcaacgatgttctccttgaat |
25645097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 155 - 271
Target Start/End: Complemental strand, 25691931 - 25691815
Alignment:
| Q |
155 |
aaaatattttacaaaatgatattaatttaaaccggtagaaacttaatataaaaaattggagactcctaatatgaatttgagttttatttcaagttttcaa |
254 |
Q |
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| T |
25691931 |
aaaatattttacaaaaagatattaatttaaaccggtagaaacttaatataaaaaattggagacgcctaatatgaatttgagtttcatttcaagttttcaa |
25691832 |
T |
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| Q |
255 |
cgatgttctccttgaat |
271 |
Q |
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| T |
25691831 |
cgatgttctccttgaat |
25691815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 25383388 - 25383339
Alignment:
| Q |
222 |
aatatgaatttgagttttatttcaagttttcaacgatgttctccttgaat |
271 |
Q |
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| T |
25383388 |
aatatgaatttgagttttatttcaagttttcaacgatgttctccttgaat |
25383339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 25383543 - 25383499
Alignment:
| Q |
29 |
tttcctctcttgttatctaatatacttgagaacttccctttttat |
73 |
Q |
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| T |
25383543 |
tttcctctcttattatctaatatacttgacaacttccctttttat |
25383499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 25645407 - 25645360
Alignment:
| Q |
29 |
tttcctctcttgttatctaata---tacttgagaacttccctttttat |
73 |
Q |
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| T |
25645407 |
tttcctctcttgttatctaataatatacttgagaaattccctttttat |
25645360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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