View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18553_high_5 (Length: 272)
Name: NF18553_high_5
Description: NF18553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18553_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 50 - 258
Target Start/End: Original strand, 25892467 - 25892676
Alignment:
| Q |
50 |
attaagctcctccttgtctcttttccattacaacgacacctaaaccatcttgttggtcta-ggaaaatctcttgctgcaaggggtgcatctatcatcttc |
148 |
Q |
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| T |
25892467 |
attaagctcctccttgtctcttttccatttcaacgacacctaaaccatcttcttggtctaaggaaaatctcttgctgcaaggggtgcatctatcatcttc |
25892566 |
T |
|
| Q |
149 |
accacaacagaaacagacggcaaaaacatgcgaattgctaacaacattgttgacagaaagaatgataaggaatatacagatatgatccttacattgtgct |
248 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25892567 |
accacaacagaaacagccggcacaaacatgcgaattgctaacaacattgttgacagaaagaatgataaggaatatacagatatgatccttacattgtgct |
25892666 |
T |
|
| Q |
249 |
agacattatt |
258 |
Q |
| |
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|||||||||| |
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| T |
25892667 |
agacattatt |
25892676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 48585902 - 48585757
Alignment:
| Q |
50 |
attaagctcctccttgtctcttttccattacaacgacacctaaaccatcttgttggtctaggaaaatctcttgctgcaaggggtgcatctatcatcttca |
149 |
Q |
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|||||||| |||||||||||||||||| |||| ||||| |||||||||||||||| |||||||| | ||||||||||| |||||| || | ||||||| |
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| T |
48585902 |
attaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttca |
48585803 |
T |
|
| Q |
150 |
ccacaacagaaacagacggcaaaaacatgcgaattgctaacaacat |
195 |
Q |
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| T |
48585802 |
ccacaacagagacggctggcaaaaacatgcgagctgctaacaacat |
48585757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 48640475 - 48640330
Alignment:
| Q |
50 |
attaagctcctccttgtctcttttccattacaacgacacctaaaccatcttgttggtctaggaaaatctcttgctgcaaggggtgcatctatcatcttca |
149 |
Q |
| |
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|||||||| |||||||||||||||||| |||| ||||| |||||||||||||||| |||||||| | ||||||||||| |||||| || | ||||||| |
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| T |
48640475 |
attaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttca |
48640376 |
T |
|
| Q |
150 |
ccacaacagaaacagacggcaaaaacatgcgaattgctaacaacat |
195 |
Q |
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|||||||||| || | ||||||||||||||| |||||||||||| |
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| T |
48640375 |
ccacaacagagacggctggcaaaaacatgcgagctgctaacaacat |
48640330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 57 - 183
Target Start/End: Complemental strand, 48667691 - 48667565
Alignment:
| Q |
57 |
tcctccttgtctcttttccattacaacgacacctaaaccatcttgttggtctaggaaaatctcttgctgcaaggggtgcatctatcatcttcaccacaac |
156 |
Q |
| |
|
|||||||||| ||||||||| |||| ||||| |||||| |||| || | ||||| |||| ||||||||||| |||||| ||| ||||||||| |||||| |
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| T |
48667691 |
tcctccttgtttcttttccagcacaaggacacataaaccctcttcttagactaggtaaatgtcttgctgcaaagggtgcttctgtcatcttcatcacaac |
48667592 |
T |
|
| Q |
157 |
agaaacagacggcaaaaacatgcgaat |
183 |
Q |
| |
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||||| || |||||||| |||||||| |
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|
| T |
48667591 |
agaaaaaggtggcaaaaatatgcgaat |
48667565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 183
Target Start/End: Complemental strand, 48629406 - 48629280
Alignment:
| Q |
57 |
tcctccttgtctcttttccattacaacgacacctaaaccatcttgttggtctaggaaaatctcttgctgcaaggggtgcatctatcatcttcaccacaac |
156 |
Q |
| |
|
|||| ||||| ||||||||| |||| ||||| |||||| |||| || | |||||||||| ||||||||||| |||||| ||| ||||||| || ||||| |
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| T |
48629406 |
tcctacttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaaatgtcttgctgcaaagggtgcctctgtcatctttactacaac |
48629307 |
T |
|
| Q |
157 |
agaaacagacggcaaaaacatgcgaat |
183 |
Q |
| |
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||| | || |||||| |||||||||| |
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|
| T |
48629306 |
agagaaagcaggcaaagacatgcgaat |
48629280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 185
Target Start/End: Complemental strand, 48662102 - 48661974
Alignment:
| Q |
57 |
tcctccttgtctcttttccattacaacgacacctaaaccatcttgttggtctaggaaaatctcttgctgcaaggggtgcatctatcatcttcaccacaac |
156 |
Q |
| |
|
|||||||||| ||||||||| |||| ||||| |||||| |||| || | |||||||| | ||||||||||| ||||| ||| |||| ||||||||||| |
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| T |
48662102 |
tcctccttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaagtgtcttgctgcaaaaggtgcctctgtcattttcaccacaac |
48662003 |
T |
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| Q |
157 |
agaaacagacggcaaaaacatgcgaattg |
185 |
Q |
| |
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||| | || |||||| ||||| |||||| |
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| T |
48662002 |
agagaaagctggcaaagacatgggaattg |
48661974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 159
Target Start/End: Original strand, 48617767 - 48617869
Alignment:
| Q |
57 |
tcctccttgtctcttttccattacaacgacacctaaaccatcttgttggtctaggaaaatctcttgctgcaaggggtgcatctatcatcttcaccacaac |
156 |
Q |
| |
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|||| ||| |||||| |||| |||| ||||| |||||| |||| || | |||| ||| | ||||||||||| |||||| ||| ||||||||| |||||| |
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| T |
48617767 |
tccttcttatctcttatccagcacaaggacacataaaccctcttcttagactagcaaagtgtcttgctgcaaagggtgcttctgtcatcttcatcacaac |
48617866 |
T |
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| Q |
157 |
aga |
159 |
Q |
| |
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||| |
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|
| T |
48617867 |
aga |
48617869 |
T |
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