View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18553_low_1 (Length: 508)
Name: NF18553_low_1
Description: NF18553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18553_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 11 - 492
Target Start/End: Complemental strand, 16298586 - 16298108
Alignment:
| Q |
11 |
aatatctgttggagaaggatctgcaaatgcagctgatgctggttgctcatcatcacagccacatggctgtgtatgatgaatttggatgtaagtttacata |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16298586 |
aatatctgttggagaaggatctgcaaatgcagctgctgctggttgctcatcatcacagccacctggctgtgtatgatgaatttggatgtaagtttacata |
16298487 |
T |
|
| Q |
111 |
tttttatgttcatcttttttacggtttgaaacaatttaatttttgttcaatattgtataatactctgcttttcttgcagcttttgattttttggcttggc |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16298486 |
tttttatgttcatcttttttacggtttgaaacaatttaatttttgttcaatattgtctaatactcttcttttcttgcagcttttgattttttggcttggc |
16298387 |
T |
|
| Q |
211 |
ataacaacttcttgtcataggtatattattaaccctcttttaatctaataatatttacttatgttgaaatcctaacatatctattttattgtgtagtgtt |
310 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16298386 |
ataacaactttttgtcataggtatattattaaccctcttttaatctaataatatttacttatgttgaaatcctaacatatctattttattgtgtagtgtt |
16298287 |
T |
|
| Q |
311 |
gttgccttatgcatataatttagaggtgggataggaatgcttttttggacgacaccaaccttgttatcacataatgttgcgactttttgagcataagtag |
410 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16298286 |
gttgcc---tgcatataatttagaggtgggataggaatgtttttttggacgacaccaaccttgttatcacataatgttgtgactttttgagcataagtag |
16298190 |
T |
|
| Q |
411 |
cagcataacttttgtgattatgagcagctttggaggtataaaatctcaatttattgtttttgtttattacgcagctgtgttt |
492 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16298189 |
cagcataacttttgtgattatgagcagctttggaggtataaaatctcaatttattatttttgtttattacgcagctgtgttt |
16298108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 178 - 492
Target Start/End: Complemental strand, 16306130 - 16305810
Alignment:
| Q |
178 |
cttttcttgcagcttttgattttttggcttggcataacaacttcttgtcataggtatattattaaccctcttttaatctaataatatttacttatgttga |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16306130 |
cttttcttgcagcttttgattttttggcttggcataacaactttttgtcataggtatattattaaccctcttttaatctaataatatttacttatgttga |
16306031 |
T |
|
| Q |
278 |
aatcctaacatatctat------tttattgtgtagtgttgttgccttatgcatataatttagaggtgggataggaatgcttttttggacgacaccaacct |
371 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||| |
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| T |
16306030 |
aatcctaacatatctatatctattttattgtgtagtgttgttgccttatgcatataatttaaaggtgggatatgaatgtttttttggacgacaccaacct |
16305931 |
T |
|
| Q |
372 |
tgttatcacataatgttgcgactttttgagcataagtagcagcataacttttgtgattatgagcagctttggaggtataaaatctcaatttattgttttt |
471 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16305930 |
tgttatcacataatgttgtgactttttgagcataagtagcagcataacttttgtgattatgagcagctttggaggtataaaatctcaatttattattttt |
16305831 |
T |
|
| Q |
472 |
gtttattacgcagctgtgttt |
492 |
Q |
| |
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||||||||| || |||||||| |
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| T |
16305830 |
gtttattacacaactgtgttt |
16305810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 11 - 492
Target Start/End: Complemental strand, 22896082 - 22895595
Alignment:
| Q |
11 |
aatatctgttggagaaggatctgcaaatgcagctgatgctggttgctcatcatcacagccacatggctgtgtatgatgaatttggatgtaagtttacata |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||| |
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| T |
22896082 |
aatatctgttggagaaggatctgcaaatgcagctgctgctggttgctcatcatcacaaccacctgactgtgtatgatgaatttggatgtaagtttacata |
22895983 |
T |
|
| Q |
111 |
tttttatgttcatcttttttacggtttgaaacaatttaatttttgttcaatattgtataatactctgcttttcttgcagcttttgattttttggcttggc |
210 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22895982 |
tttttatgttaatcttttttacagtttgaaacaatttaatttttgttcaatattgtctaatactcttcttttcttgcagcttttgattttttggcttggc |
22895883 |
T |
|
| Q |
211 |
ataacaacttcttgtcataggtatattattaaccctcttttaatctaataatatttacttatgttgaaatcctaacatat------ctattttattgtgt |
304 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22895882 |
ataacaactttttgtcataggtatattattaaccctcttttaatctaataatatttacttatgttgaaatcctaacatatctatatctattttattgtgt |
22895783 |
T |
|
| Q |
305 |
agtgttgttgccttatgcatataatttagaggtgggataggaatgcttttttggacgacaccaaccttgttatcacataatgttgcgactttttgagcat |
404 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
22895782 |
agtgttgttgccttatgcatataatttaaaggtgggatatgaatgtttttttggacgacaccaaccttgttatcacataatgttgtgactttttgagcat |
22895683 |
T |
|
| Q |
405 |
aagtagcagcataacttttgtgattatgagcagctttggaggtataaaatctcaatttattgtttttgtttattacgcagctgtgttt |
492 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| |
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| T |
22895682 |
aagtagcagcataacttttgtgattatgagcagctttggaggtataaaatctcaatttattttttttgtttattactcatctgtgttt |
22895595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 47 - 335
Target Start/End: Complemental strand, 15976803 - 15976511
Alignment:
| Q |
47 |
tgctggttgctcatcatcacagccacatggctgtgtatgatgaatttggatgtaagtttacatatttttatgttcatcttttttacggtttgaaacaatt |
146 |
Q |
| |
|
|||||||| |||||||||||| || | ||| | ||| ||| ||||||||||||||||||||| ||||||||| ||| |||| ||||||||||| |||| |
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| T |
15976803 |
tgctggtttctcatcatcacaacctcctggatatgtttgaaaaatttggatgtaagtttacatgtttttatgtccat-ttttcaacggtttgaaagaatt |
15976705 |
T |
|
| Q |
147 |
taatttttgttcaatattgtataatactctgcttttctt---gcagcttttgattttttggcttggcataacaacttcttgtcataggtatattattaac |
243 |
Q |
| |
|
|||||| | |||||||| || ||||| | | | || || |||||| |||||| |||| ||||| |||| ||||| |||| ||||||||||| | ||| |
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|
| T |
15976704 |
taatttattttcaatatggtctaatagtaagttattgtttttgcagctcttgattctttgacttggtataataactttttgtgataggtatattgtaaac |
15976605 |
T |
|
| Q |
244 |
cctctttt-aatctaataatatttacttatgttgaaatcctaacatatc-tattttattgtgtagtgttgttgccttatgcatataatttagag |
335 |
Q |
| |
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| |||||| ||||||||||| ||||||||||||||| |||||||| | |||||||||||| | | ||||| ||||||||||||||||||||| |
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| T |
15976604 |
cttctttttaatctaataatcgttacttatgttgaaagcctaacatggcctattttattgtgcaatcttgtttccttatgcatataatttagag |
15976511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 5 - 172
Target Start/End: Original strand, 14428978 - 14429140
Alignment:
| Q |
5 |
tcgaagaatatctgttggagaaggatctgcaaatgcagctgatgctggttgctcatcatcacagccacatggctgtgtatgatgaatttggatgtaagtt |
104 |
Q |
| |
|
||||||||||| |||||||||| ||| || ||||| || |||||||||| |||||||||||||||| ||||| ||| |||| ||||| |||||||||| |
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| T |
14428978 |
tcgaagaatatatgttggagaatgatatgaaaatggag---atgctggttgttcatcatcacagccacctggctatgtttgataaatttagatgtaagtt |
14429074 |
T |
|
| Q |
105 |
tacatatttttatgttcatcttttttacggtttgaaacaatttaatttttgttcaatattgtataata |
172 |
Q |
| |
|
||||| |||||| |||||| ||||||| ||||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
14429075 |
tacat-gttttattttcatc-tttttacagtttgaaacaatttagtttttgttcaatattgtctaata |
14429140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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