View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18554_high_5 (Length: 457)
Name: NF18554_high_5
Description: NF18554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18554_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 40005855 - 40006222
Alignment:
| Q |
1 |
tcatcactgccagaaactaaatgcaacttatcatgacgcggataatgaacaaacctaacaggacgattgtttgaactaagacgacggagacgggtacgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40005855 |
tcatcactgccagaaactaaatgcaacttatcatgacgcggataatgaacaaacctaacaggacgattgtttgaactaagacgacggagacgggtacgtg |
40005954 |
T |
|
| Q |
101 |
ttttgacatcaaagatttggataaaccctgagaggtctgaagcggcgacgagacgagcatcgttacggaaagagacggaggaaacagtgtcggagaagga |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40005955 |
ttttgacatcaaagatttggataaaacctgagaggtctgaagcggcgacgagacgagcatcgttacggaaagagacggaggaaacagtgtcggagaagga |
40006054 |
T |
|
| Q |
201 |
ggagatggtggcggtttgggaaagagtttgagagctgaagatggagagagaggctgaattagcggcgacgaaggaatagggtggatttggggagaaggtg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40006055 |
ggagatggtggcggtttgggaaagagtttgagagctgaagatggagagagaggctgaattagcggcggcgaaggaatagggtggatttggggagaaggtg |
40006154 |
T |
|
| Q |
301 |
atggaagggatagagaattgtttagggatttgttgggttttgaaggaagaccagtatttggattcaga |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40006155 |
atggaagggatagagaattgtttagggatttgttgggttttgaaggaagaccagtatttggattcaga |
40006222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 27851892 - 27851928
Alignment:
| Q |
215 |
tttgggaaagagtttgagagctgaagatggagagaga |
251 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27851892 |
tttgggaaagggtttgagagctgaagatggagagaga |
27851928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University