View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18554_low_1 (Length: 745)

Name: NF18554_low_1
Description: NF18554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18554_low_1
NF18554_low_1
[»] chr3 (4 HSPs)
chr3 (38-271)||(39946958-39947189)
chr3 (330-503)||(39947203-39947375)
chr3 (658-729)||(39947574-39947645)
chr3 (386-464)||(8330697-8330771)
[»] chr6 (1 HSPs)
chr6 (386-464)||(23915975-23916049)
[»] chr5 (1 HSPs)
chr5 (386-464)||(15285332-15285406)
[»] chr4 (2 HSPs)
chr4 (386-464)||(51579323-51579397)
chr4 (386-464)||(22364566-22364640)
[»] chr2 (2 HSPs)
chr2 (386-464)||(3121613-3121687)
chr2 (426-474)||(4434731-4434779)
[»] chr1 (2 HSPs)
chr1 (386-464)||(46845761-46845835)
chr1 (386-464)||(527004-527078)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 38 - 271
Target Start/End: Original strand, 39946958 - 39947189
Alignment:
Q  38 ttgaccccattaaatgagtttgaaaagtcaagccgatccactttccactatccggcgcactcgataaagctcaaatctgtctactcaaattaatgtgtat 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  39946958 ttgaccccattaaatgagtttgaaaagtcaagccgatccactttccactatccggcgcactcgataaagctcaaatct--ctactcaaattaatgtgtat 39947055  T
Q  138 gtggttgatggatagtgtgtgtaagtgtgaaaatttcatgatatcaaatttgaatcatacgttaatgatggcttattggctcgaataattttggttttta 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39947056 gtggttgatggatagtgtgtgtaagtgtgaaaatttcatgatatcaaatttgaatcatacgttaatgatggcttattggctcgaataattttggttttta 39947155  T
Q  238 attttatcaaaatgaatcttattgttcggcttat 271  Q
    ||||||||||||||||||||||||||||||||||    
T  39947156 attttatcaaaatgaatcttattgttcggcttat 39947189  T

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Target: chr3; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 330 - 503
Target Start/End: Original strand, 39947203 - 39947375
Alignment:
Q  330 acgtttcataggacatgtacatataccagagaatgtgagnnnnnnng---tgtgaagatcacatggacacatatcacaattgtatgtgcgtgtatatata 426  Q
    |||||||| ||||||||||||| ||||||||||||||||       |   |||||||||||||||||||||||||||||||||||||| |||||||        
T  39947203 acgtttcacaggacatgtacatgtaccagagaatgtgagtttttttggtgtgtgaagatcacatggacacatatcacaattgtatgtgggtgtata---- 39947298  T
Q  427 agtggtacatgccatataaggtgatctatatatcactatccttttaaaaatgtctctctcttccatttagtttcttt 503  Q
    ||||||||||| ||  ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39947299 agtggtacatgtcacttaaggtggtctatatatcattatccttttaaaaatgtctctctcttccatttagtttcttt 39947375  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 658 - 729
Target Start/End: Original strand, 39947574 - 39947645
Alignment:
Q  658 gttagcatttctcaaaccaaaaataagttcagattatatatatagcaaaacaaatgggattatgctaattag 729  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39947574 gttagcatttctcaaaccaaaaataagttcagattatatatatagcaaaacaaataggattatgctaattag 39947645  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 464
Target Start/End: Original strand, 8330697 - 8330771
Alignment:
Q  386 cacatggacacatatcacaattgtatgtgcgtgtatatataagtggtacatgccatataaggtgatctatatatcacta 464  Q
    |||||||||| ||||||||||||| ||||  |||| |    ||||||||||||||| ||||||| ||||| ||||||||    
T  8330697 cacatggacatatatcacaattgtgtgtgaatgtaca----agtggtacatgccatctaaggtggtctatgtatcacta 8330771  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 386 - 464
Target Start/End: Complemental strand, 23916049 - 23915975
Alignment:
Q  386 cacatggacacatatcacaattgtatgtgcgtgtatatataagtggtacatgccatataaggtgatctatatatcacta 464  Q
    ||||||||||||| |||||||||| | || |||    ||||||||||||||||||| ||||||||||||| ||||||||    
T  23916049 cacatggacacatgtcacaattgtgtatgggtg----tataagtggtacatgccatctaaggtgatctatgtatcacta 23915975  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 386 - 464
Target Start/End: Complemental strand, 15285406 - 15285332
Alignment:
Q  386 cacatggacacatatcacaattgtatgtgcgtgtatatataagtggtacatgccatataaggtgatctatatatcacta 464  Q
    ||||||||||||| |||||||||| | || |||    ||||||||||||||||||| ||||||| ||||| ||||||||    
T  15285406 cacatggacacatgtcacaattgtgtatgagtg----tataagtggtacatgccatctaaggtggtctatgtatcacta 15285332  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 386 - 464
Target Start/End: Complemental strand, 51579397 - 51579323
Alignment:
Q  386 cacatggacacatatcacaattgtatgtgcgtgtatatataagtggtacatgccatataaggtgatctatatatcacta 464  Q
    ||||||||||||| ||||||||||||||| |||    || |||||||||||||||  ||||||| ||||| ||||||||    
T  51579397 cacatggacacatgtcacaattgtatgtgggtg----tacaagtggtacatgccacctaaggtggtctatgtatcacta 51579323  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 464
Target Start/End: Original strand, 22364566 - 22364640
Alignment:
Q  386 cacatggacacatatcacaattgtatgtgcgtgtatatataagtggtacatgccatataaggtgatctatatatcacta 464  Q
    |||||||||||||||||||||||||| || |||    ||||||||||| ||||||  |||| |||| ||| ||||||||    
T  22364566 cacatggacacatatcacaattgtatatgggtg----tataagtggtatatgccacctaagttgatttatgtatcacta 22364640  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 386 - 464
Target Start/End: Complemental strand, 3121687 - 3121613
Alignment:
Q  386 cacatggacacatatcacaattgtatgtgcgtgtatatataagtggtacatgccatataaggtgatctatatatcacta 464  Q
    ||||||||||||| |||||||||| | || |||    ||||||||||||||||||| ||||||| ||||| ||||||||    
T  3121687 cacatggacacatgtcacaattgtgtatgagtg----tataagtggtacatgccatctaaggtggtctatgtatcacta 3121613  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 426 - 474
Target Start/End: Original strand, 4434731 - 4434779
Alignment:
Q  426 aagtggtacatgccatataaggtgatctatatatcactatccttttaaa 474  Q
    ||||||||||||||| |||||||| ||||||||||||||  ||||||||    
T  4434731 aagtggtacatgccacataaggtggtctatatatcactactcttttaaa 4434779  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 386 - 464
Target Start/End: Original strand, 46845761 - 46845835
Alignment:
Q  386 cacatggacacatatcacaattgtatgtgcgtgtatatataagtggtacatgccatataaggtgatctatatatcacta 464  Q
    ||||||||||||| |||||||||| | || |||    ||||||||||||||||||| ||||||| ||||| ||||||||    
T  46845761 cacatggacacatgtcacaattgtgtatgggtg----tataagtggtacatgccatctaaggtggtctatgtatcacta 46845835  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 464
Target Start/End: Original strand, 527004 - 527078
Alignment:
Q  386 cacatggacacatatcacaattgtatgtgcgtgtatatataagtggtacatgccatataaggtgatctatatatcacta 464  Q
    ||||||||||||| |||||||||| | || |||    ||||||||||||||||||  ||||||| ||||| ||||||||    
T  527004 cacatggacacatgtcacaattgtgtatgggtg----tataagtggtacatgccacctaaggtggtctatgtatcacta 527078  T

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