View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18554_low_10 (Length: 264)

Name: NF18554_low_10
Description: NF18554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18554_low_10
NF18554_low_10
[»] chr2 (20 HSPs)
chr2 (16-243)||(16252276-16252504)
chr2 (21-233)||(18963348-18963561)
chr2 (16-233)||(16414325-16414536)
chr2 (85-243)||(15257099-15257260)
chr2 (25-233)||(21485190-21485400)
chr2 (66-211)||(45526339-45526485)
chr2 (25-207)||(16739329-16739513)
chr2 (25-211)||(34906361-34906549)
chr2 (125-222)||(33945934-33946031)
chr2 (66-222)||(37127874-37128023)
chr2 (25-110)||(5938325-5938411)
chr2 (158-211)||(15113398-15113451)
chr2 (176-211)||(5939152-5939187)
chr2 (152-211)||(34948508-34948567)
chr2 (41-103)||(24168643-24168704)
chr2 (128-233)||(15911771-15911876)
chr2 (140-221)||(18137596-18137677)
chr2 (158-211)||(41961720-41961773)
chr2 (158-211)||(43333841-43333894)
chr2 (140-232)||(13278690-13278782)
[»] chr5 (18 HSPs)
chr5 (19-233)||(27948588-27948802)
chr5 (42-233)||(27495157-27495349)
chr5 (53-233)||(27690394-27690575)
chr5 (25-233)||(41615943-41616150)
chr5 (25-209)||(1710315-1710501)
chr5 (25-211)||(5343661-5343849)
chr5 (76-211)||(23344768-23344904)
chr5 (158-211)||(32746867-32746920)
chr5 (19-211)||(6432325-6432519)
chr5 (49-143)||(38984439-38984534)
chr5 (25-211)||(24855834-24856022)
chr5 (168-211)||(38984387-38984430)
chr5 (25-110)||(32746970-32747056)
chr5 (140-233)||(12785150-12785243)
chr5 (140-233)||(18808977-18809070)
chr5 (174-211)||(31471598-31471635)
chr5 (140-232)||(26279031-26279123)
chr5 (140-232)||(27114301-27114393)
[»] chr6 (11 HSPs)
chr6 (21-211)||(12305001-12305192)
chr6 (25-224)||(25138575-25138775)
chr6 (124-233)||(28546869-28546977)
chr6 (138-233)||(6837246-6837341)
chr6 (25-211)||(13036916-13037102)
chr6 (174-211)||(34949556-34949593)
chr6 (66-110)||(1778383-1778427)
chr6 (158-211)||(480343-480396)
chr6 (140-233)||(20818528-20818621)
chr6 (25-100)||(480456-480532)
chr6 (140-232)||(31318531-31318623)
[»] chr3 (31 HSPs)
chr3 (84-243)||(45405623-45405785)
chr3 (20-233)||(2183087-2183299)
chr3 (84-211)||(18876057-18876185)
chr3 (25-222)||(10494649-10494848)
chr3 (87-211)||(21979884-21980009)
chr3 (87-211)||(22002315-22002440)
chr3 (21-176)||(3733510-3733665)
chr3 (37-110)||(53394065-53394138)
chr3 (49-213)||(9119278-9119443)
chr3 (132-222)||(42899224-42899314)
chr3 (49-211)||(9127058-9127221)
chr3 (49-211)||(9135165-9135328)
chr3 (140-233)||(41174805-41174898)
chr3 (25-211)||(21450086-21450275)
chr3 (25-211)||(49327234-49327423)
chr3 (25-211)||(8486428-8486615)
chr3 (25-102)||(41974488-41974566)
chr3 (25-211)||(47374686-47374874)
chr3 (158-211)||(16482885-16482938)
chr3 (51-111)||(27035681-27035742)
chr3 (158-211)||(44207644-44207697)
chr3 (158-211)||(48062207-48062260)
chr3 (25-211)||(49440188-49440377)
chr3 (186-233)||(12717647-12717694)
chr3 (128-222)||(33843523-33843617)
chr3 (140-233)||(10509270-10509363)
chr3 (51-111)||(27024425-27024486)
chr3 (171-204)||(30388947-30388980)
chr3 (25-110)||(30527783-30527867)
chr3 (140-233)||(47646912-47647005)
chr3 (52-111)||(25214514-25214574)
[»] chr1 (30 HSPs)
chr1 (23-211)||(29250711-29250902)
chr1 (20-211)||(21187521-21187714)
chr1 (50-211)||(6605557-6605719)
chr1 (84-211)||(22817457-22817585)
chr1 (25-211)||(39598238-39598426)
chr1 (25-211)||(3475184-3475373)
chr1 (25-211)||(7564498-7564686)
chr1 (51-211)||(34549872-34550033)
chr1 (157-211)||(14270477-14270531)
chr1 (49-211)||(18272295-18272458)
chr1 (49-211)||(18276949-18277112)
chr1 (25-211)||(12524827-12525015)
chr1 (158-211)||(7199533-7199586)
chr1 (158-211)||(29946822-29946875)
chr1 (138-233)||(48892095-48892190)
chr1 (157-211)||(22334958-22335012)
chr1 (63-156)||(33936802-33936898)
chr1 (140-234)||(37952295-37952389)
chr1 (171-211)||(5749863-5749903)
chr1 (140-232)||(11952470-11952562)
chr1 (66-110)||(30518131-30518175)
chr1 (140-232)||(49851705-49851797)
chr1 (20-102)||(22334812-22334895)
chr1 (25-110)||(14270584-14270670)
chr1 (158-211)||(10223221-10223274)
chr1 (152-233)||(29961393-29961474)
chr1 (66-110)||(21535777-21535821)
chr1 (140-232)||(41091164-41091256)
chr1 (141-233)||(44757581-44757673)
chr1 (140-232)||(50262041-50262133)
[»] chr4 (25 HSPs)
chr4 (66-211)||(17647217-17647363)
chr4 (55-200)||(34953527-34953673)
chr4 (60-233)||(40602737-40602911)
chr4 (25-169)||(11647780-11647926)
chr4 (51-211)||(20516687-20516840)
chr4 (157-213)||(44108114-44108170)
chr4 (25-211)||(13721377-13721565)
chr4 (158-211)||(16684299-16684352)
chr4 (140-232)||(38551319-38551411)
chr4 (140-233)||(28780824-28780917)
chr4 (158-211)||(40693035-40693088)
chr4 (171-208)||(53269416-53269453)
chr4 (158-211)||(53511551-53511604)
chr4 (66-164)||(53632920-53633020)
chr4 (158-211)||(55612438-55612491)
chr4 (128-232)||(6963451-6963555)
chr4 (140-232)||(31093103-31093195)
chr4 (171-211)||(47985748-47985788)
chr4 (155-211)||(52919506-52919562)
chr4 (25-99)||(44108225-44108300)
chr4 (25-102)||(51889245-51889323)
chr4 (152-233)||(55136661-55136742)
chr4 (140-232)||(1602781-1602873)
chr4 (173-233)||(39807359-39807419)
chr4 (179-211)||(45659590-45659622)
[»] chr7 (19 HSPs)
chr7 (25-211)||(24687439-24687627)
chr7 (53-233)||(10907025-10907211)
chr7 (51-243)||(19646929-19647120)
chr7 (140-222)||(1377356-1377438)
chr7 (25-211)||(26792020-26792209)
chr7 (25-204)||(38257388-38257569)
chr7 (25-199)||(29332203-29332379)
chr7 (25-211)||(35584982-35585170)
chr7 (158-211)||(7255446-7255499)
chr7 (25-211)||(37998695-37998883)
chr7 (158-211)||(43749248-43749301)
chr7 (42-105)||(1906477-1906541)
chr7 (40-110)||(1377468-1377539)
chr7 (167-233)||(1906604-1906670)
chr7 (158-211)||(108728-108781)
chr7 (158-207)||(15032598-15032647)
chr7 (140-233)||(46254861-46254954)
chr7 (51-95)||(1852284-1852328)
chr7 (133-233)||(31326662-31326762)
[»] scaffold0210 (1 HSPs)
scaffold0210 (120-233)||(8139-8252)
[»] chr8 (7 HSPs)
chr8 (21-233)||(4258630-4258842)
chr8 (25-211)||(11646-11834)
chr8 (25-211)||(24830780-24830970)
chr8 (25-169)||(41834769-41834915)
chr8 (158-211)||(23421005-23421058)
chr8 (140-232)||(39318644-39318736)
chr8 (140-232)||(31701093-31701185)
[»] scaffold0001 (1 HSPs)
scaffold0001 (124-222)||(427216-427314)
[»] scaffold0048 (1 HSPs)
scaffold0048 (42-233)||(51837-52027)
[»] scaffold0054 (1 HSPs)
scaffold0054 (51-221)||(18980-19152)
[»] scaffold0160 (1 HSPs)
scaffold0160 (124-222)||(17273-17371)
[»] scaffold0168 (1 HSPs)
scaffold0168 (171-211)||(12224-12264)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 16252276 - 16252504
Alignment:
Q  16 atcatggaatataaaatccggaacccctcagttcattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatg-catttttaacg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| | |||||||||    
T  16252276 atcatggaatataaaatccggaacccctcagttcattttggacggtggcgtttcaccaatggtttggatggttagtggagttttaatgtcttttttaacg 16252375  T
Q  115 gttttgattgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatg 214  Q
    | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  16252376 gctttgattgtggaacacattttatttgactgtacttatgacatatgattgatttaaggctataaaaaggcttggatcttcaacaatttccttcattctg 16252475  T
Q  215 cacttcacatcctttcttattttgttcaa 243  Q
    |||||||||||||||||||||||||||||    
T  16252476 cacttcacatcctttcttattttgttcaa 16252504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 18963561 - 18963348
Alignment:
Q  21 ggaatataaaatccggaacccctcagttcattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttt-aacggtttt 119  Q
    ||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  18963561 ggaatataaaatctggaacccctcagttcattttggacgatggcgtttcatcaaaggtttggacggttagtggagttttaatgcatttttgaacggtttt 18963462  T
Q  120 gattgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcactt 219  Q
    ||||||||||||| |||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  18963461 gattgtggaacacgttttatttgactgtacttgtgacctatgattgatttaaggctataaaaaggcttggatcttcaacaatttccttcattcttcactt 18963362  T
Q  220 cacatcctttctta 233  Q
    ||| ||||||||||    
T  18963361 cacctcctttctta 18963348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 16414536 - 16414325
Alignment:
Q  16 atcatggaatataaaatccggaacccctcagttcattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcat-ttttaacg 114  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||  |||||||||||| ||||||||    
T  16414536 atcatggaatataaaatccgaaacccctcagttcattttggacggtggcgtttcaccaaaggtttgaacggttagtgatgttttaatgcattttttaacg 16414437  T
Q  115 gttttgattgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatg 214  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||    
T  16414436 gttttgattgtggaacacattttatttgactgtact-------tatgactgatttaaggttataaaaaggtttggatcttcaacaatttccttcattctg 16414344  T
Q  215 cacttcacatcctttctta 233  Q
    |||||||||||||||||||    
T  16414343 cacttcacatcctttctta 16414325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 85 - 243
Target Start/End: Original strand, 15257099 - 15257260
Alignment:
Q  85 ggttagtggagttttaatgcattttta-acggttttgattgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaag 183  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15257099 ggttagtggagttttaatgcatttttggacggttttgattgtggaacacgttttatttgactgtacttatgacctatgactgatttaaggctataaaaag 15257198  T
Q  184 gcttggatcttcaacaatttccttcattatgcacttcacatcctttctt--attttgttcaa 243  Q
     ||||||||||||| ||||| ||||||| | |||||||| |||||||||  |||||||||||    
T  15257199 acttggatcttcaataattttcttcattcttcacttcacctcctttcttacattttgttcaa 15257260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 233
Target Start/End: Original strand, 21485190 - 21485400
Alignment:
Q  25 tataaaatccggaacccctcagttcattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttt--aacggttttgat 122  Q
    |||| ||||||||| | |||||||  |||||||||||||| ||||||||| ||||||| | ||||||||||||||||||| |||||    |||||||||     
T  21485190 tatataatccggaaacactcagttgtttttggacggtggcgtttcaccaaaggtttggccagttagtggagttttaatgcgttttttggtcggttttgaa 21485289  T
Q  123 tgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcac 222  Q
    ||   ||||| ||||  |||| |||||||||||| || ||||  ||| |||||||||| | ||||  || |||||||| ||| |||||| | ||||||||    
T  21485290 tgacaaacacgtttttattgattgtacttatgacctaggacttgttttaggctataaataagctttcatattcaacaaattctttcattcttcacttcac 21485389  T
Q  223 atcctttctta 233  Q
     || |||||||    
T  21485390 ctcttttctta 21485400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 45526485 - 45526339
Alignment:
Q  66 tttcaccaatggtttggacggttagtggagttttaatgcattttta-acggttttgattgtggaacacattttatttgactgtacttatgacatatgact 164  Q
    |||||||||  ||| || || |||||||||||| |||||||||||  ||  |||| | ||||||||||||||||||||||| || ||| ||| ||| |||    
T  45526485 tttcaccaaaagttaggccgattagtggagtttgaatgcattttttgacaattttaaatgtggaacacattttatttgactataattaagacctataact 45526386  T
Q  165 gatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
     |||||||||||||||||| |||||||||| |||| |||| ||||||    
T  45526385 tatttaaggctataaaaagccttggatctttaacattttctttcatt 45526339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 16739329 - 16739513
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttt--aacggttttga 121  Q
    |||||||||||||||  ||||||  |||||||| ||||| | ||||||||||||||||| || |||||||||||||||||| |||||   |||| |||||    
T  16739329 tataaaatccggaacaactcagtaacattttggccggtgacgtttcaccaatggtttggccgattagtggagttttaatgcgttttttggacggatttga 16739428  T
Q  122 ttgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttcctt 207  Q
     ||   ||||| ||||  |||||| | |  ||||| || ||||  ||| ||||||||||||||||||||||||||||| |||||||    
T  16739429 atgaaaaacacgtttttcttgact-tccaaatgacctaggacttgttttaggctataaaaaggcttggatcttcaacattttcctt 16739513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 34906549 - 34906361
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttt--aacggttttga 121  Q
    ||||||||||||||| ||||| |  |||||||| ||| | | ||||||||| |||||||  |||||||||||||||||||| |||||  |||||||||||    
T  34906549 tataaaatccggaacacctcaataacattttggccggagacgtttcaccaaaggtttggcaggttagtggagttttaatgcgttttttgaacggttttga 34906450  T
Q  122 ttgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
     ||   ||||| ||||  |||||| | |  ||||| || ||||  ||  ||||||||||||||| || |||||||||| |||||||||||    
T  34906449 atgaaaaacacgttttccttgact-tccaaatgacctaggacttgttctaggctataaaaaggcatgaatcttcaacattttccttcatt 34906361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 33946031 - 33945934
Alignment:
Q  125 tggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcac 222  Q
    ||||| |||||||||||||||||| ||||||  || ||||  ||| |||||||| | ||| ||| ||||||||||| |||||||||| | ||||||||    
T  33946031 tggaaaacattttatttgactgtagttatgatctaggacttgttttaggctatatataggtttgcatcttcaacaaattccttcattcttcacttcac 33945934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 222
Target Start/End: Original strand, 37127874 - 37128023
Alignment:
Q  66 tttcaccaatggtttggacggttagtggagt-tttaatgcatttttaacggttttgattgtggaacacattttatttgactgtacttatgacatatgact 164  Q
    ||||||||| ||||| ||||||||||||||| ||||||||||||||         ||  ||||||||||||||||||||||||| |||| | ||| ||||    
T  37127874 tttcaccaaaggttttgacggttagtggagtgtttaatgcatttttg--------gacagtggaacacattttatttgactgtatttatcatataggact 37127965  T
Q  165 gatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcac 222  Q
      ||| |||||||||| | ||||| || || ||||| ||| |||||| | ||||||||    
T  37127966 tgttttaggctataaataagcttgcatttttaacaaattctttcattcttcacttcac 37128023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 5938325 - 5938411
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttt 110  Q
    ||||||||||| ||| |||||||  |||||||| | ||| | ||||| ||| ||||||| ||||||||||||||||||| |||||||    
T  5938325 tataaaatccgaaacacctcagtaacattttggccagtgacgtttcatcaaaggtttggccggttagtggagttttaatacattttt 5938411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 15113398 - 15113451
Alignment:
Q  158 tatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||||  ||| |||||||||||||| |||||||||||||| |||||||||||    
T  15113398 tatgacttgttttaggctataaaaaggtttggatcttcaacattttccttcatt 15113451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 5939152 - 5939187
Alignment:
Q  176 ataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||||||||||||||||||||| |||||||||||    
T  5939152 ataaaaaggcttggatcttcaacattttccttcatt 5939187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 34948567 - 34948508
Alignment:
Q  152 atgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    ||||| |||||||  ||| |||||||||||||||||| ||||| |||| |||||||||||    
T  34948567 atgacctatgacttgttttaggctataaaaaggcttgaatctttaacattttccttcatt 34948508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 24168704 - 24168643
Alignment:
Q  41 cctcagttcattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatg 103  Q
    ||||| || ||||||||| ||||| ||||||||| ||||||| |||||||| |||||||||||    
T  24168704 cctcaatttattttggactgtggcgtttcaccaaaggtttgg-cggttagttgagttttaatg 24168643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 233
Target Start/End: Complemental strand, 15911876 - 15911771
Alignment:
Q  128 aacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcct 227  Q
    ||||||||||  ||||||||| | ||||| || ||||  ||| |||||||||| ||||||  ||||||||||| | |||| ||| | |||||||| || |    
T  15911876 aacacattttcattgactgtattaatgacctaggacttgttttaggctataaataggcttccatcttcaacaaataccttgattcttcacttcacctctt 15911777  T
Q  228 ttctta 233  Q
    ||||||    
T  15911776 ttctta 15911771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 18137677 - 18137596
Alignment:
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttca 221  Q
    |||| |||||| ||||| || |||| |||| |||||||||| ||||||  ||||||||||| | |||||||| | |||||||    
T  18137677 ttgattgtactaatgacctaggacttattttaggctataaataggcttttatcttcaacaaataccttcattcttcacttca 18137596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 41961773 - 41961720
Alignment:
Q  158 tatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||||  ||| |||||||||||||| | |||||||||||| |||||||||||    
T  41961773 tatgacttgttttaggctataaaaaggttgggatcttcaacattttccttcatt 41961720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 43333894 - 43333841
Alignment:
Q  158 tatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||||  ||| |||||||||||||||||||||||| |||| ||| |||||||    
T  43333894 tatgacttgttttaggctataaaaaggcttggatctttaacatttttcttcatt 43333841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 13278782 - 13278690
Alignment:
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctt 232  Q
    ||||||||| | |||||| | ||||  ||| |||||||||| ||||||  ||||||||||| | |||||||| | |||||||| || ||||||    
T  13278782 ttgactgtattaatgacaaaggacttgttttaggctataaataggcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 13278690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 27948802 - 27948588
Alignment:
Q  19 atggaatataaaatccggaacccctcagttcattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta-acggtt 117  Q
    |||||||||||| ||||||||| ||||||||||||| ||||||||| ||||||||| |||||| |||||||||||||||||||| |||||||  ||||||    
T  27948802 atggaatataaa-tccggaacctctcagttcattttagacggtggcgtttcaccaaaggtttgaacggttagtggagttttaatacatttttggacggtt 27948704  T
Q  118 ttgattgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcac 217  Q
    ||||||||||||||| |||||||||| |||||||||||   ||||||||||||||||||||||||| || | |||||||||||||||||||||| | |||    
T  27948703 ttgattgtggaacacgttttatttgaatgtacttatgaacgatgactgatttaaggctataaaaagactcgaatcttcaacaatttccttcattcttcac 27948604  T
Q  218 ttcacatcctttctta 233  Q
    ||||| ||||||||||    
T  27948603 ttcacctcctttctta 27948588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 233
Target Start/End: Complemental strand, 27495349 - 27495157
Alignment:
Q  42 ctcagttcattttggacggtggcatttcaccaatggtttggacggttagtggag-ttttaatgcattttt-aacggttttgattgtggaacacattttat 139  Q
    |||||||  ||||||||||| || |||||||||   ||||| ||||||||||||   ||||| |||||||  |||| ||||| ||||| |||| |||||     
T  27495349 ctcagttgtttttggacggtagcgtttcaccaaatatttggtcggttagtggagccattaatacatttttggacgg-tttgaatgtgggacacgttttag 27495251  T
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctta 233  Q
    ||||||||| |||| || |||||||| |||||||||||||| || |||  |||||||||||||| ||||||| | |||||||| || |||||||    
T  27495250 ttgactgtaattattacctatgactggtttaaggctataaatagactttcatcttcaacaattttcttcattcttcacttcacctcttttctta 27495157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 233
Target Start/End: Original strand, 27690394 - 27690575
Alignment:
Q  53 ttggacggtggcatttcaccaatggtttggacggttagtggagt-tttaatgcatttttaacggttttgattgtggaacacattttatttgactgtactt 151  Q
    |||||||||||| ||||| ||| ||||||||||||| ||| ||| ||||||||||||||    | || ||   ||||| ||  ||  |||||||||| ||    
T  27690394 ttggacggtggcgtttcatcaaaggtttggacggtttgtgaagtgtttaatgcatttttggtcggttggaccatggaaaacgcttcctttgactgtagtt 27690493  T
Q  152 atgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctta 233  Q
    |||   || |||||||||||||||||||| | ||||| ||||||||||||||| |||||| | |||||| |||| |||||||    
T  27690494 atggtctaggactgatttaaggctataaatatgcttgcatcttcaacaatttcattcattcttcacttcccatcttttctta 27690575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 233
Target Start/End: Original strand, 41615943 - 41616150
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttt--aacggttttga 121  Q
    ||||||||||||||| |||| ||  |||||||| ||||| | ||||||||  ||||||  ||||||||||| ||||| |||||||||  |||||||||||    
T  41615943 tataaaatccggaacacctctgtaacattttggccggtgacgtttcaccataggtttgaccggttagtggaatttta-tgcattttttgaacggttttga 41616041  T
Q  122 ttgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttca 221  Q
     ||   ||||  ||||  |||||| | |  ||||| || || |  ||| ||||||||||||||||||||||||||||| |||||||||||||   |||||    
T  41616042 atgaaaaacatgttttccttgact-tccaaatgacctaggatttgttttaggctataaaaaggcttggatcttcaacattttccttcattat--tcttca 41616138  T
Q  222 catcctttctta 233  Q
    | ||||||||||    
T  41616139 cctcctttctta 41616150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 209
Target Start/End: Original strand, 1710315 - 1710501
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttt-aacggttttgat 122  Q
    |||||||||||||| | ||||||  |||||||| ||||| | ||||||||| |||| || ||||||||||||||||||| | |||||  || ||||| |     
T  1710315 tataaaatccggaaacgctcagtaacattttggccggtgacgtttcaccaaaggttaggccggttagtggagttttaatacgtttttggactgttttaaa 1710414  T
Q  123 tgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttca 209  Q
    ||   ||||  ||||  |||||| | |  || || |||||||  ||| ||||||||||||||||||||||||||||| |||| ||||    
T  1710415 tgaaaaacatgttttccttgactttccaaattacctatgacttgttttaggctataaaaaggcttggatcttcaacattttctttca 1710501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 5343661 - 5343849
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta--acggttttga 121  Q
    ||||||||||| || ||||||||  |||||||| ||||| | ||||||||| ||||  | |  |||||||||||||||| | |||||   ||||||||||    
T  5343661 tataaaatccgaaaaccctcagtaacattttggtcggtgacgtttcaccaaaggttatgtcatttagtggagttttaatacgttttttggacggttttga 5343760  T
Q  122 ttgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
     ||   ||||| ||||  |||||| | |  || || |||||||  ||| ||||||||||||||||||||||||||||| |||||||||||    
T  5343761 atgaaaaacacgtttttcttgact-tccaaattacctatgacttgttttaggctataaaaaggcttggatcttcaacattttccttcatt 5343849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 211
Target Start/End: Original strand, 23344768 - 23344904
Alignment:
Q  76 ggtttggacggttagtggagt-tttaatgcattttt-aacggttttgattgtggaacacattttatttgactgtacttatgacatatgactgatttaagg 173  Q
    ||||||||||||||||||||| |||||||||||||| ||| |||  ||  ||||||||| |||||||  |||||| ||||||  || ||||  ||| | |    
T  23344768 ggtttggacggttagtggagtgtttaatgcattttttaacagttg-gacggtggaacacgttttattctactgtagttatgatctaggacttgttttaag 23344866  T
Q  174 ctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
     |||||||||| ||| ||||||||||| ||||||||||    
T  23344867 ttataaaaaggtttgtatcttcaacaaattccttcatt 23344904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 32746920 - 32746867
Alignment:
Q  158 tatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    ||||||| | || ||||||||||||||||||||||||||||| |||||||||||    
T  32746920 tatgacttactttaggctataaaaaggcttggatcttcaacattttccttcatt 32746867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 6432325 - 6432519
Alignment:
Q  19 atggaatataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta--acgg 115  Q
    ||||| |||||||||||||| |||| |||  |||||||| ||||| | |||||||||   || || ||||||||||||||||||| | |||||   ||||    
T  6432325 atggattataaaatccggaaacccttagtaacattttggccggtgacgtttcaccaaccattaggccggttagtggagttttaatacgttttttggacgg 6432424  T
Q  116 ttttgattgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||| ||   ||||| ||||  |||||| | |  || || |||||||  ||| |||||||||||||||| |||||||||||| |||| ||||||    
T  6432425 ttttgaatgaaaaacacgttttccttgact-tccaaattacctatgacttgttttaggctataaaaaggctcggatcttcaacattttcattcatt 6432519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 143
Target Start/End: Complemental strand, 38984534 - 38984439
Alignment:
Q  49 cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgc-atttttaacggttttgattgtggaacacattttatttga 143  Q
    ||||| || ||||| | ||||||||| |||| || ||||||||||||||| ||||| |||||| ||||||||||  ||||||||| ||| ||||||    
T  38984534 catttcggccggtgacgtttcaccaaaggttaggccggttagtggagtttgaatgcaatttttgacggttttgaacgtggaacacgtttaatttga 38984439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 24855834 - 24856022
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta--acggttttga 121  Q
    |||||||| ||||| ||||||||  |||||||| ||||| | ||||||||| ||||  | ||||||||||||||||||| | |||||   ||| ||||||    
T  24855834 tataaaattcggaaaccctcagtaacattttggccggtgacgtttcaccaaaggttatgtcggttagtggagttttaatacgttttttggacgattttga 24855933  T
Q  122 ttgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
     ||   ||||| ||||  |||||| | |  || || |||||||   || |||||||||||||| |||||||||||||| |||||||||||    
T  24855934 atgaaaaacacgttttccttgact-tccaaattacctatgacttgctttaggctataaaaaggtttggatcttcaacattttccttcatt 24856022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 38984430 - 38984387
Alignment:
Q  168 ttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    ||||| ||||||||||||||||||||| |||| |||||||||||    
T  38984430 ttaagactataaaaaggcttggatcttaaacattttccttcatt 38984387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 32747056 - 32746970
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttt 110  Q
    ||||||||||| || ||||||||  |||||||| ||||| | ||||||||| ||||  | ||||||||||||||||||| | |||||    
T  32747056 tataaaatccgtaaaccctcagtgacattttggccggtgacgtttcaccaaaggttatgccggttagtggagttttaatacgttttt 32746970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 12785243 - 12785150
Alignment:
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctta 233  Q
    ||||||||| | ||||| || ||||  ||| |||||||||| ||||||  ||||||||||| | |||||||| | |||||||| || |||||||    
T  12785243 ttgactgtattaatgacctaggacttgttttaggctataaataggcttcaatcttcaacaaataccttcattcttcacttcacctcttttctta 12785150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 18809070 - 18808977
Alignment:
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctta 233  Q
    ||||||||| | ||||| |||||||  ||| |||||||||| || |||  ||||||||||| | |||||||| | |||||||| || |||||||    
T  18809070 ttgactgtattaatgacctatgacttgttttaggctataaatagtcttccatcttcaacaaataccttcattcttcacttcacctcttttctta 18808977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 31471598 - 31471635
Alignment:
Q  174 ctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  31471598 ctataaagaggcttggatcttcaacattttccttcatt 31471635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 26279123 - 26279031
Alignment:
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctt 232  Q
    ||||||||||| |||||  | ||||  ||| |||||||||| ||||||  ||||||||||| | |||||||| | |||||||| || ||||||    
T  26279123 ttgactgtactaatgacccaggacttgttttaggctataaataggcttccatcttcaacaaataccttcattcttcacttcacttcttttctt 26279031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 27114393 - 27114301
Alignment:
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctt 232  Q
    ||||||||| | |||||||| ||||  ||| |||||||||| ||||||  ||||||||||| |  ||||||| | |||||||| || ||||||    
T  27114393 ttgactgtattaatgacataggacttgttttaggctataaataggcttccatcttcaacaaatatcttcattcttcacttcacctcttttctt 27114301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 7e-64; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 12305001 - 12305192
Alignment:
Q  21 ggaatataaaatccggaacccctcagttcattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttt-aacggtttt 119  Q
    ||||||||||||  | || |||| |||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||    
T  12305001 ggaatataaaatatgaaatcccttagtttattttggacggtggcttttcaccaaaggtttggacggatagtggagttttaatgcatttttgaacggtttt 12305100  T
Q  120 gattgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||||||  |  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12305101 gattgtggacaatgttttatttgactgtacttatgacctatgactgatttaaggctataaaaaggcttgaatcttcaacaatttccttcatt 12305192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 25138575 - 25138775
Alignment:
Q  25 tataaaatccggaacccctcagttcattttggacggtggcatttcaccaatggtttggacggttagtggagttt--taatgcattttta-acggttttga 121  Q
    |||| |||||| || |||||||||  |||||||| ||||| |||||||||   ||||| ||||||||||||| |  ||||||||||||  ||||||| ||    
T  25138575 tatataatccgaaaaccctcagtttcttttggactgtggcgtttcaccaaaattttggccggttagtggagtgtgttaatgcatttttggacggttt-ga 25138673  T
Q  122 ttgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttca 221  Q
     |||| ||||| ||||| || |||||||||||||| |||||||| |||||||| ||||| ||| ||||||||||||||||||||| |||| | |||||||    
T  25138674 atgtgaaacacgttttagttaactgtacttatgacctatgactggtttaaggc-ataaataggtttggatcttcaacaatttcctacattcttcacttca 25138772  T
Q  222 cat 224  Q
    |||    
T  25138773 cat 25138775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 28546977 - 28546869
Alignment:
Q  124 gtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcaca 223  Q
    ||||||| |||||||||||| |||| ||||||  || ||||||||| |||||||||| ||||||| |||||||||||||||||| ||| | ||||||||     
T  28546977 gtggaacgcattttatttgattgtagttatgatttaggactgattttaggctataaataggcttgaatcttcaacaatttcctt-attcttcacttcacc 28546879  T
Q  224 tcctttctta 233  Q
    ||||||||||    
T  28546878 tcctttctta 28546869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 233
Target Start/End: Original strand, 6837246 - 6837341
Alignment:
Q  138 atttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctta 233  Q
    ||||||||||| ||||||  || |||||||||||| ||||||| |||  ||||||||||| ||||||||||||| | |||||||| || |||||||    
T  6837246 atttgactgtagttatgatctaggactgatttaagactataaatagggctggatcttcaataatttccttcattcttcacttcacctcttttctta 6837341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 13037102 - 13036916
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcatttttaa--cggttttga 121  Q
    |||||||||||||| ||||||||  | |||||| ||||| | ||||||||| ||||  | ||||||||||||||||||| | ||||| |  |||||||||    
T  13037102 tataaaatccggaaaccctcagtaactttttggccggtgacgtttcaccaaaggttatgccggttagtggagttttaatacgttttttagacggttttga 13037003  T
Q  122 ttgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
     ||   ||||| ||||  |||||| | |  || ||||  ||||  ||| ||||||||||||||||||||||||||||| ||| |||||||    
T  13037002 atgaaaaacacgttttccttgacttt-caaattacat--gactttttttaggctataaaaaggcttggatcttcaacatttttcttcatt 13036916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 34949593 - 34949556
Alignment:
Q  174 ctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||||||||||||||||||||||| |||||||||||    
T  34949593 ctataaaaaggcttggatcttcaacattttccttcatt 34949556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 1778383 - 1778427
Alignment:
Q  66 tttcaccaatggtttggacggttagtggagttttaatgcattttt 110  Q
    ||||||||| ||||||| ||||||||||||||||||||| |||||    
T  1778383 tttcaccaaaggtttggccggttagtggagttttaatgcgttttt 1778427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 480396 - 480343
Alignment:
Q  158 tatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||||  ||| |||||||||||||||||| ||||| |||| |||||||||||    
T  480396 tatgacttgttttaggctataaaaaggcttgaatctttaacattttccttcatt 480343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 20818621 - 20818528
Alignment:
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctta 233  Q
    |||| |||||||||||| ||||||| |||| || ||||||| |  |||  ||||||||||| |||||||||| |  ||||||| || |||||||    
T  20818621 ttgattgtacttatgacgtatgacttattttagactataaatatacttccatcttcaacaaattccttcattctttacttcacctcttttctta 20818528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 480532 - 480456
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagtttta 100  Q
    ||||||||||| || ||||||||  |||||||| ||||| | ||||||||| ||||  | |||||||||||||||||    
T  480532 tataaaatccgaaaaccctcagtaacattttggccggtgacgtttcaccaaaggttatgccggttagtggagtttta 480456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 31318623 - 31318531
Alignment:
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctt 232  Q
    ||||||||| | ||||| || ||||  ||| |||||||||| ||||||  ||||||||||| | |||||||| | |||||||| || ||||||    
T  31318623 ttgactgtagtaatgacctaggacttgttttaggctataaataggctttcatcttcaacaaataccttcattcttcacttcacctcttttctt 31318531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 84 - 243
Target Start/End: Original strand, 45405623 - 45405785
Alignment:
Q  84 cggttagtggagttttaatgcattttta-acggttttgattgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaa 182  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  45405623 cggttagtggagttttaatgcatttttggacggttttgattgtggaacacgttttatttgactgtacttatgacctatgactgatttaaggctataaaaa 45405722  T
Q  183 ggcttggatcttcaacaatttccttcattatgcacttcacatcctttctt--attttgttcaa 243  Q
    || ||||||||||||||||||| |||||| | |||||||| |||||||||  |||||||||||    
T  45405723 ggtttggatcttcaacaatttctttcattcttcacttcacctcctttcttacattttgttcaa 45405785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 20 - 233
Target Start/End: Complemental strand, 2183299 - 2183087
Alignment:
Q  20 tggaatataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta-acggtt 117  Q
    |||||||||||||||| ||||| |||||| |||||||||||||| || |||||||| ||||||  ||||||||||||||| |||||||||||  || |||    
T  2183299 tggaatataaaatccgtaaccc-tcagtttcattttggacggtgtcacttcaccaaaggtttgaccggttagtggagtttgaatgcattttttgacagtt 2183201  T
Q  118 ttgattgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcac 217  Q
    || | ||||| | |||||||| ||||||||||||| ||| ||||||||||||||| ||||||||||||||| ||||||| |||||||||||||| |   |    
T  2183200 tttaatgtgggagacattttaattgactgtacttaagacctatgactgatttaagactataaaaaggcttgaatcttcaccaatttccttcatttt--tc 2183103  T
Q  218 ttcacatcctttctta 233  Q
    ||||||||||||||||    
T  2183102 ttcacatcctttctta 2183087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 84 - 211
Target Start/End: Complemental strand, 18876185 - 18876057
Alignment:
Q  84 cggttagtggagttttaatgcattttta-acggttttgattgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaa 182  Q
    ||||||||||||||| |||||||||||  |||||||||| |||||||||| ||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  18876185 cggttagtggagtttgaatgcattttttgacggttttgaatgtggaacacgttttatttgactgtaattaagacatatgacttatttaaggctataaaaa 18876086  T
Q  183 ggcttggatcttcaacaatttccttcatt 211  Q
    ||||||||||||||||| |||||||||||    
T  18876085 ggcttggatcttcaacattttccttcatt 18876057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 10494649 - 10494848
Alignment:
Q  25 tataaaatccggaacccctcagttcattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta--acggttttgat 122  Q
    |||| |||||| || |||||| ||  ||||||| |||||| ||||||||| ||||||| || ||||||||||||||||||||||||   ||| ||||||     
T  10494649 tatataatccgaaaaccctcaatttgttttggatggtggcgtttcaccaaaggtttggccgattagtggagttttaatgcattttttggacgattttgaa 10494748  T
Q  123 tgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcac 222  Q
    ||| |||||  |||||||||||| |||||||||| ||||||||||||| | ||||||| | |||| ||||||||||||||||||||||| | ||||||||    
T  10494749 tgtagaacatgttttatttgactctacttatgacctatgactgatttacgactataaatatgcttagatcttcaacaatttccttcattcttcacttcac 10494848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 87 - 211
Target Start/End: Original strand, 21979884 - 21980009
Alignment:
Q  87 ttagtggagttttaatgcattttta-acggttttgattgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggc 185  Q
    |||||||||||| |||| ||||||  |||||||||| |||||||||| ||||||||||||||| ||| ||| ||||||| ||||||||||||||||| ||    
T  21979884 ttagtggagtttgaatggattttttgacggttttgaatgtggaacacgttttatttgactgtaattaagacctatgacttatttaaggctataaaaaagc 21979983  T
Q  186 ttggatcttcaacaatttccttcatt 211  Q
    |||||||||||| | |||||||||||    
T  21979984 ttggatcttcaagattttccttcatt 21980009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 87 - 211
Target Start/End: Original strand, 22002315 - 22002440
Alignment:
Q  87 ttagtggagttttaatgcattttta-acggttttgattgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggc 185  Q
    |||||||||||| |||| ||||||  |||||||||| |||||||||| ||||||||||||||| ||| ||| ||||||| ||||||||||||||||| ||    
T  22002315 ttagtggagtttgaatggattttttgacggttttgaatgtggaacacgttttatttgactgtaattaagacctatgacttatttaaggctataaaaaagc 22002414  T
Q  186 ttggatcttcaacaatttccttcatt 211  Q
    |||||||||||| | |||||||||||    
T  22002415 ttggatcttcaagattttccttcatt 22002440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 21 - 176
Target Start/End: Original strand, 3733510 - 3733665
Alignment:
Q  21 ggaatataaaatccggaacccctcagttcattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttt-aacggtttt 119  Q
    ||||||||||||  | ||||||||| || ||||||||| ||||| |||||||||  ||||  |||||||||||||||||||||||||||| ||| |||||    
T  3733510 ggaatataaaatttgtaacccctcattttattttggactgtggcgtttcaccaaatgtttt-acggttagtggagttttaatgcatttttgaactgtttt 3733608  T
Q  120 gattgtggaacacattttatttgactgtacttatgacatatgactgatttaaggcta 176  Q
    | ||||| ||||  |||||||||||||||||| | || |||||||||||||||||||    
T  3733609 ggttgtgaaacatgttttatttgactgtacttctaacctatgactgatttaaggcta 3733665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 53394138 - 53394065
Alignment:
Q  37 aacccctcagttcattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttt 110  Q
    |||||||||||| ||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||    
T  53394138 aacccctcagtttattttggacggtggtgtttcaccaaaggtttggacggttagtggagttttaatgcattttt 53394065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 49 - 213
Target Start/End: Complemental strand, 9119443 - 9119278
Alignment:
Q  49 cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta--acggttttgattgtggaacacattttatttgactg 146  Q
    |||||||| ||||||| ||||||||| |||| || ||||||||||||||||||| | |||||   |||||||||| ||   ||||| ||||  ||||||     
T  9119443 cattttggccggtggcgtttcaccaaaggttaggccggttagtggagttttaatacgttttttggacggttttgaatgaaaaacacgttttccttgact- 9119345  T
Q  147 tacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattat 213  Q
    | |  || || ||||||| |||| |||||||||| |||||||||||||||||| |||||||||||||    
T  9119344 tccaaattacctatgacttattttaggctataaacaggcttggatcttcaacattttccttcattat 9119278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 222
Target Start/End: Complemental strand, 42899314 - 42899224
Alignment:
Q  132 cattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcac 222  Q
    |||||||||||||| || |||||| ||||||||  ||| |||||||||| ||||||| || |||||||| |||||||||| | ||||||||    
T  42899314 cattttatttgactatagttatgatatatgacttgttttaggctataaataggcttgcattttcaacaaattccttcattcttcacttcac 42899224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 211
Target Start/End: Complemental strand, 9127221 - 9127058
Alignment:
Q  49 cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgc-attttta-acggttttgattgtggaacacattttatttgactg 146  Q
    |||||||| ||||||||||||||||| ||||  |  |||||||||||||||||| | ||||||  |||||||||| ||   ||||| ||||  ||||||     
T  9127221 cattttggccggtggcatttcaccaaaggttaagctggttagtggagttttaatacgatttttggacggttttgaatgaaaaacacgttttccttgact- 9127123  T
Q  147 tacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    | |  || || |||||||  ||| |||||||||| |||||||||||||||||| |||||||||||    
T  9127122 tccaaattacgtatgacttgttttaggctataaacaggcttggatcttcaacattttccttcatt 9127058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 211
Target Start/End: Complemental strand, 9135328 - 9135165
Alignment:
Q  49 cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgc-attttta-acggttttgattgtggaacacattttatttgactg 146  Q
    |||||||| ||||||||||||||||| ||||  |  |||||||||||||||||| | ||||||  |||||||||| ||   ||||| ||||  ||||||     
T  9135328 cattttggccggtggcatttcaccaaaggttaagctggttagtggagttttaatacgatttttggacggttttgaatgaaaaacacgttttccttgact- 9135230  T
Q  147 tacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    | |  || || |||||||  ||| |||||||||| |||||||||||||||||| |||||||||||    
T  9135229 tccaaattacgtatgacttgttttaggctataaacaggcttggatcttcaacattttccttcatt 9135165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 41174898 - 41174805
Alignment:
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctta 233  Q
    ||||||||| | |||||||| ||||  ||| |||||||||| ||||||  ||||||||||| | |||||||| | ||||||||||| |||||||    
T  41174898 ttgactgtattaatgacataggacttgttttaggctataaataggcttccatcttcaacaaataccttcattcttcacttcacatcttttctta 41174805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 21450086 - 21450275
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta---acggttttg 120  Q
    |||||||||||||| ||||||||  || ||||| || || | ||||||||| ||||  | ||||||||||||||||||| | |||||    |||||||||    
T  21450086 tataaaatccggaaaccctcagtaacaatttggccgatgacgtttcaccaaaggttatgccggttagtggagttttaatacgtttttttggacggttttg 21450185  T
Q  121 attgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    | ||   ||||| ||||  |||||| | |  || || |||||||  ||| |||||||||||||| |||||||||||||| |||||||||||    
T  21450186 aatgaaaaacacgttttccttgact-tccaaattacctatgacttgttttaggctataaaaaggtttggatcttcaacattttccttcatt 21450275  T

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Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 49327234 - 49327423
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta---acggttttg 120  Q
    |||||||||| ||| ||||||||  |||||||| ||||| | ||||||||| ||||  | ||||||||||||||||||| | |||||    |||||||||    
T  49327234 tataaaatccagaaaccctcagtaacattttggccggtgacgtttcaccaaaggttatgccggttagtggagttttaatacgtttttttggacggttttg 49327333  T
Q  121 attgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    | ||   ||||  ||||  |||||| | |  || || |||||||  ||| |||||||||||||||||| |||||||||| |||||||||||    
T  49327334 aatgaaaaacaagttttccttgact-tccaaattacctatgacttgttttaggctataaaaaggcttgaatcttcaacattttccttcatt 49327423  T

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Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 8486428 - 8486615
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta--acggttttga 121  Q
    |||||||||||||| |||||||   |||||||| ||||| | ||||||||| |||| || ||||||||| ||||||||| |||||||   | ||||||||    
T  8486428 tataaaatccggaaaccctcaggaacattttggccggtgacgtttcaccaaaggttaggccggttagtgaagttttaatacattttttggatggttttga 8486527  T
Q  122 ttgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
     ||   ||||| ||||  |||||| | |  || || |||||||  ||| ||||||||||||||| || |||||||||| |||||||||||    
T  8486528 atgaa-aacacgtttttcttgact-tccaaattacctatgacttgttttaggctataaaaaggcatgaatcttcaacattttccttcatt 8486615  T

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Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 41974488 - 41974566
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaat 102  Q
    |||||||||||||| ||||||||  |||||||| ||||| | ||||||||| ||||  | |||||||||||||||||||    
T  41974488 tataaaatccggaaaccctcagtaacattttggccggtgacgtttcaccaaaggttatgccggttagtggagttttaat 41974566  T

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Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 47374686 - 47374874
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta--acggttttga 121  Q
    |||||||||||||| | ||||||  |||||||| ||||| | ||||||||| ||||  | || |||||||||||||||| | |||||   ||||||||||    
T  47374686 tataaaatccggaaacgctcagtaacattttggccggtgacgtttcaccaaaggttatgccgtttagtggagttttaatacgttttttggacggttttga 47374785  T
Q  122 ttgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
     ||   ||||  ||||  |||||| | |  || || |||||||  ||| ||||||||||||| ||||||||||||||| |||||||||||    
T  47374786 atgaaaaacatgttttccttgact-tccaaattacctatgacttgttttaggctataaaaagtcttggatcttcaacattttccttcatt 47374874  T

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Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 16482938 - 16482885
Alignment:
Q  158 tatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||||  ||| ||||||||||||| ||||||||||||||| |||||||||||    
T  16482938 tatgacttgttttaggctataaaaagacttggatcttcaacattttccttcatt 16482885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 27035742 - 27035681
Alignment:
Q  51 ttttggacggtggcatttcaccaatggtttggacggttagtggag-ttttaatgcattttta 111  Q
    |||||||||||||||||||||||| | |||||||| ||||| |||  |||||||||||||||    
T  27035742 ttttggacggtggcatttcaccaaagatttggacgattagtagagagtttaatgcattttta 27035681  T

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Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 44207644 - 44207697
Alignment:
Q  158 tatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||||  ||| |||||||||||| |||||||||||||||| |||||||||||    
T  44207644 tatgacttgttttaggctataaaaaagcttggatcttcaacattttccttcatt 44207697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 48062260 - 48062207
Alignment:
Q  158 tatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||||  ||| |||||||||||||||||| |||||||||| |||||||||||    
T  48062260 tatgacttgttttaggctataaaaaggcttgaatcttcaacattttccttcatt 48062207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 49440188 - 49440377
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttt---aacggttttg 120  Q
    |||||||| ||||| |||| |||  |||||||| ||| | ||||||||||| ||||  | ||||||||||||||||||| | |||||   ||||||||||    
T  49440188 tataaaattcggaaacccttagtaacattttggccggcgacatttcaccaaaggttatgccggttagtggagttttaatacgtttttttgaacggttttg 49440287  T
Q  121 attgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    | ||   ||||  ||||  |||||| | |  || || |||||||  ||| || |||||| ||||||||||||||||||| |||||||||||    
T  49440288 aatgaaaaacaagttttccttgact-tccaaattacctatgacttgttttagcctataataaggcttggatcttcaacattttccttcatt 49440377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 12717694 - 12717647
Alignment:
Q  186 ttggatcttcaacaatttccttcattatgcacttcacatcctttctta 233  Q
    |||||||||||||||||||||||||| | |||||||| || |||||||    
T  12717694 ttggatcttcaacaatttccttcattcttcacttcacctcttttctta 12717647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 222
Target Start/End: Complemental strand, 33843617 - 33843523
Alignment:
Q  128 aacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcac 222  Q
    ||||| ||||||||||||||  ||||||  || ||||  ||| |||||||||| ||| ||  ||||||||||| |||||||||| | ||||||||    
T  33843617 aacacgttttatttgactgtggttatgatctaggacttgttttaggctataaataggtttccatcttcaacaaattccttcattcttcacttcac 33843523  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 10509270 - 10509363
Alignment:
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctta 233  Q
    ||||||||| | ||||| || ||||  ||| |||||||||| ||||||  ||||||||||| | |||||||| | |||||||| || |||||||    
T  10509270 ttgactgtattaatgacctaggacttcttttaggctataaataggcttctatcttcaacaaataccttcattcttcacttcacctcttttctta 10509363  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 27024486 - 27024425
Alignment:
Q  51 ttttggacggtggcatttcaccaatggtttggacggttagtggag-ttttaatgcattttta 111  Q
    |||||||||||||||||||||||| | |||||||| |||||  ||  |||||||||||||||    
T  27024486 ttttggacggtggcatttcaccaaagatttggacgattagtatagagtttaatgcattttta 27024425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 30388980 - 30388947
Alignment:
Q  171 aggctataaaaaggcttggatcttcaacaatttc 204  Q
    ||||||||||||||||||||||||||||| ||||    
T  30388980 aggctataaaaaggcttggatcttcaacattttc 30388947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 30527783 - 30527867
Alignment:
Q  25 tataaaatccggaacccctcagttcattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttt 110  Q
    |||| ||||||||  |||||||||  |||| |||| || | |||||| || ||||||| |||||| ||||||||||||||||||||    
T  30527783 tatataatccggacaccctcagttattttttgacgatg-cgtttcactaaaggtttggccggttaatggagttttaatgcattttt 30527867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 47647005 - 47646912
Alignment:
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctta 233  Q
    ||||||||| | ||||| || ||||  ||| |||||||||| ||||||  ||||||||||| | |||||||| | |||||||| || |||||||    
T  47647005 ttgactgtattaatgacctaggacttgttttaggctataaataggcttccatcttcaacaaataccttcattcttcacttcacctcttttctta 47646912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 25214514 - 25214574
Alignment:
Q  52 tttggacggtggcatttcaccaatggtttggacggttagtgg-agttttaatgcattttta 111  Q
    ||||||||||||| ||||| ||| ||||||||||||| |||| |  |||||||||||||||    
T  25214514 tttggacggtggcgtttcagcaaaggtttggacggtttgtggtatgtttaatgcattttta 25214574  T

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Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 211
Target Start/End: Complemental strand, 29250902 - 29250711
Alignment:
Q  23 aatataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta--acggtttt 119  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||| || ||||   ||||||   || | ||     
T  29250902 aatataaaatccggaacccctcagtttcattttggacggtggcgtttcaccaaaggtttggacggttagtggggtgttaaatgattttttggacagctta 29250803  T
Q  120 gattgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    | ||||||||||| ||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29250802 ggttgtggaacacgttttatttgactgtacttaagacctatgactgatttaaggttataaaaaggcttggatcttcaacaatttccttcatt 29250711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 21187714 - 21187521
Alignment:
Q  20 tggaatataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta-acggtt 117  Q
    |||| ||||||||||||||  ||| |||  |||| ||| || || ||||||||||| |||| || ||||||||||||||| |||||||||||  ||| ||    
T  21187714 tggattataaaatccggaaatccttagtaacattctggtcgttgacatttcaccaaaggttaggccggttagtggagtttgaatgcattttttgacgatt 21187615  T
Q  118 ttgattgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||| |||||||||| ||||||||||||||| ||| ||| |||||||||||||||||||||||| | |||| |||||||||| |||||||||||    
T  21187614 ttgaatgtggaacacgttttatttgactgtaattaagacctatgactgatttaaggctataaaatgccttgaatcttcaacattttccttcatt 21187521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 211
Target Start/End: Original strand, 6605557 - 6605719
Alignment:
Q  50 attttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta-acggttttgattgtggaacacattttatttgactgta 148  Q
    ||||||| ||||| | |||| |||| |||| || | ||||||||||||| |||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  6605557 attttggccggtgacgtttcgccaaaggttaggccagttagtggagtttcaatgcattttttgacggttttgaatgtggaacacattttatttgactgta 6605656  T
Q  149 cttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
     ||| ||| ||||||| ||||| |||||||||||||||| ||||||||||| ||| |||||||    
T  6605657 attaagacctatgacttatttagggctataaaaaggcttagatcttcaacatttttcttcatt 6605719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 84 - 211
Target Start/End: Original strand, 22817457 - 22817585
Alignment:
Q  84 cggttagtggagttttaatgcattttta-acggttttgattgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaa 182  Q
    ||||||||||||||| |||||||||||  ||||| |||| |||||||||| ||||||||||||||| ||| ||| ||||||| |||||||||||||||||    
T  22817457 cggttagtggagtttgaatgcattttttgacggtattgaatgtggaacacgttttatttgactgtaattaagacctatgacttatttaaggctataaaaa 22817556  T
Q  183 ggcttggatcttcaacaatttccttcatt 211  Q
    || |||||||||||||| |||||||||||    
T  22817557 ggtttggatcttcaacattttccttcatt 22817585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 39598426 - 39598238
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta--acggttttga 121  Q
    |||||||||||||| ||||||||  |||||||| ||||| | ||||||||| ||||  | ||||||||||||||||||| | |||||   ||||||||||    
T  39598426 tataaaatccggaaaccctcagtaacattttggccggtgacgtttcaccaaaggttatgccggttagtggagttttaatacgttttttggacggttttga 39598327  T
Q  122 ttgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
     ||   ||||| ||||  |||||| | |  || || |||||||  ||| ||||||||||||||||||||||||||||| |||||||||||    
T  39598326 atgaaaaacacgttttccttgact-tccaaattacctatgacttgttttaggctataaaaaggcttggatcttcaacattttccttcatt 39598238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 3475184 - 3475373
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta---acggttttg 120  Q
    |||||||||||||| ||||||||  |||||||| ||||| | ||||||||| ||||  | ||||||||||||||||||| | |||||    |||||||||    
T  3475184 tataaaatccggaaaccctcagtaacattttggccggtgacgtttcaccaaaggttatgccggttagtggagttttaatacgtttttttggacggttttg 3475283  T
Q  121 attgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    | ||   ||||| ||||  |||||| | |  || || |||||||  ||| ||||||||||||||||||||||||||||| |||||||||||    
T  3475284 aatgaaaaacacgttttccttgact-tccaaattacctatgacttgttttaggctataaaaaggcttggatcttcaacattttccttcatt 3475373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 7564498 - 7564686
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttt--aacggttttga 121  Q
    ||||||||||||||| ||| |||  |||||||| ||||| | ||||||||| ||||||| ||||||||||||||||||||| |||||   ||||||||||    
T  7564498 tataaaatccggaacaccttagtaacattttggccggtgacgtttcaccaaaggtttggccggttagtggagttttaatgcgttttttggacggttttga 7564597  T
Q  122 ttgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
     |    || || ||||  || ||| | |  ||||| |||||||  ||| |||||||||||||| |||||||||||||| |||||||||||    
T  7564598 ataaaaaatacgttttcctttact-tccaaatgacctatgacttgttttaggctataaaaaggtttggatcttcaacattttccttcatt 7564686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 211
Target Start/End: Complemental strand, 34550033 - 34549872
Alignment:
Q  51 ttttggacggtggcatttcaccaatggtttggacggttagtggagt-tttaatgcattttt-aacggttttgattgtggaacacattttatttgactgta 148  Q
    |||||||||||||| |||||| || |||||||||||||||||| || ||||||| |||||| ||||| || ||| |||||| || |||||||| | ||||    
T  34550033 ttttggacggtggcgtttcactaaaggtttggacggttagtggtgtgtttaatgaatttttgaacgg-ttggatggtggaaaacgttttatttaattgta 34549935  T
Q  149 cttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
     ||||||  || ||||  ||| |||||||||| ||| ||| || |||||||| ||||||||||    
T  34549934 gttatgatctaggacttgttttaggctataaataggtttgcatattcaacaaattccttcatt 34549872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 14270531 - 14270477
Alignment:
Q  157 atatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    ||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||    
T  14270531 atatgactgtttttaggctataaaaaggcttggatcttcaacattttccttcatt 14270477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 49 - 211
Target Start/End: Complemental strand, 18272458 - 18272295
Alignment:
Q  49 cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta--acggttttgattgtggaacacattttatttgactg 146  Q
    |||||||| ||||| | ||||||||| ||||  | ||||||||||||||||||| | |||||   |||||||||| ||   ||||| ||||  ||||||     
T  18272458 cattttggccggtgacgtttcaccaaaggttatgccggttagtggagttttaatacgttttttggacggttttgaatgaaaaacacgttttcattgact- 18272360  T
Q  147 tacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    | |  || || |||||||  ||| ||||||||||||||||||||||||||||| |||||||||||    
T  18272359 tccaaattacctatgacttgttttaggctataaaaaggcttggatcttcaacattttccttcatt 18272295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 49 - 211
Target Start/End: Complemental strand, 18277112 - 18276949
Alignment:
Q  49 cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta--acggttttgattgtggaacacattttatttgactg 146  Q
    |||||||| ||||| | ||||||||| ||||  | ||||||||||||||||||| | |||||   |||||||||| ||   ||||| ||||  ||||||     
T  18277112 cattttggccggtgacgtttcaccaaaggttatgccggttagtggagttttaatacgttttttggacggttttgaatgaaaaacacgttttcattgact- 18277014  T
Q  147 tacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    | |  || || |||||||  ||| ||||||||||||||||||||||||||||| |||||||||||    
T  18277013 tccaaattacctatgacttgttttaggctataaaaaggcttggatcttcaacattttccttcatt 18276949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 12524827 - 12525015
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta--acggttttga 121  Q
    |||||||||| ||| ||||||||  |||||||| |||||   ||||||||| ||||  |  |||||||||||||||||| | ||||||  ||||||||||    
T  12524827 tataaaatccagaaaccctcagtaacattttggccggtgatgtttcaccaaaggttatgctggttagtggagttttaatacgtttttaggacggttttga 12524926  T
Q  122 ttgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
     ||   ||||  ||||  |||||| | |  || || |||||||  ||| ||||||||||||||||||||||||||||| |||||||||||    
T  12524927 atgaaaaacaagttttccttgact-tccaaattacttatgacttgttttaggctataaaaaggcttggatcttcaacattttccttcatt 12525015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 7199533 - 7199586
Alignment:
Q  158 tatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||||  ||| ||||||||||||||||||||||||||||| |||||||||||    
T  7199533 tatgacttgttttaggctataaaaaggcttggatcttcaacattttccttcatt 7199586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 29946822 - 29946875
Alignment:
Q  158 tatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||||  ||| ||||||||||||||||||||||||||||| |||||||||||    
T  29946822 tatgacttgttttaggctataaaaaggcttggatcttcaacattttccttcatt 29946875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 48892190 - 48892095
Alignment:
Q  138 atttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctta 233  Q
    ||||||||||| ||||||  |||||||  ||||||| |||||| ||||| | |||||| |||||||| |||||| | |||||| |||| |||||||    
T  48892190 atttgactgtagttatgatctatgacttgtttaaggttataaataggctagtatcttcgacaatttcattcattcttcacttcccatcttttctta 48892095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 22334958 - 22335012
Alignment:
Q  157 atatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    ||||||||  ||| ||||||||||||||||| ||||||||||| |||||||||||    
T  22334958 atatgacttgttttaggctataaaaaggcttcgatcttcaacattttccttcatt 22335012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 156
Target Start/End: Complemental strand, 33936898 - 33936802
Alignment:
Q  63 gcatttcaccaatggtttggacggttagtggagttttaatgcattttt---aacggttttgattgtggaacacattttatttgactgtacttatgac 156  Q
    |||||||||||| ||||||  ||||||||||||||||||||| |||||   |||| |||||| ||   ||||||||||| |||  ||||||||||||    
T  33936898 gcatttcaccaaaggtttgaccggttagtggagttttaatgcgttttttcaaacgattttgaatgccaaacacattttaattgtatgtacttatgac 33936802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 234
Target Start/End: Complemental strand, 37952389 - 37952295
Alignment:
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttcttat 234  Q
    ||||||||| | ||||| || ||||  ||| |||||||||||||||||  ||||||||||| | |||||||| | |||||||| || ||||||||    
T  37952389 ttgactgtattaatgacctaggacttgttttaggctataaaaaggcttccatcttcaacaaataccttcattcttcacttcacctcttttcttat 37952295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 5749863 - 5749903
Alignment:
Q  171 aggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||||||||||||||| |||||||||| |||||||||||    
T  5749863 aggctataaaaaggcttgaatcttcaacattttccttcatt 5749903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 11952470 - 11952562
Alignment:
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctt 232  Q
    ||||||||| | |||||| | |||| |||| |||||||||| ||||||  ||||||||||| | |||||||| | |||||||| || ||||||    
T  11952470 ttgactgtattaatgacaaaagacttattttaggctataaataggcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 11952562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 30518131 - 30518175
Alignment:
Q  66 tttcaccaatggtttggacggttagtggagttttaatgcattttt 110  Q
    ||||||||| ||||||| ||||||||||||||||||||| |||||    
T  30518131 tttcaccaaaggtttggccggttagtggagttttaatgcgttttt 30518175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 49851797 - 49851705
Alignment:
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctt 232  Q
    ||||||||||| ||||| || ||||  ||| |||||||||| ||||||  ||||||||||| | |||||||| | |||||||| || ||||||    
T  49851797 ttgactgtactaatgacctaggacttgttttaggctataaataggctttcatcttcaacaaataccttcattcttcacttcacctcttttctt 49851705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 22334812 - 22334895
Alignment:
Q  20 tggaatataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaat 102  Q
    |||| |||||||||||||| ||||||||  |||||| | ||||| | ||||||||| ||||  | |||||||||||||||||||    
T  22334812 tggattataaaatccggaaaccctcagtaacattttcgccggtgacgtttcaccaaaggttatgccggttagtggagttttaat 22334895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 14270670 - 14270584
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttt 110  Q
    ||||| |||||||| ||||||||  |||||||| ||||| | ||||||||| ||||  | ||||||||||||||||||| | |||||    
T  14270670 tataacatccggaaaccctcagtaacattttggtcggtgacgtttcaccaaaggttatgtcggttagtggagttttaatacgttttt 14270584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 10223221 - 10223274
Alignment:
Q  158 tatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||||  ||| |||||||||||||| |||||||||||||| ||||| |||||    
T  10223221 tatgacttgttttaggctataaaaaggtttggatcttcaacattttccgtcatt 10223274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 29961474 - 29961393
Alignment:
Q  152 atgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctta 233  Q
    ||||| || |||| |||| |||||||||| || |||  ||||||||||| | |||||||| | ||||||||||| |||||||    
T  29961474 atgacttaagacttattttaggctataaatagacttccatcttcaacaaataccttcattcttcacttcacatcttttctta 29961393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 21535777 - 21535821
Alignment:
Q  66 tttcaccaatggtttggacggttagtggagttttaatgcattttt 110  Q
    ||||||||| ||||||| ||| ||||||||||||||||| |||||    
T  21535777 tttcaccaaaggtttggccgggtagtggagttttaatgcgttttt 21535821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 41091256 - 41091164
Alignment:
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctt 232  Q
    ||||||||| | ||||| || ||||  ||| |||||||||| ||||||  ||||||||||| | |||||||| | |||||||| || ||||||    
T  41091256 ttgactgtattaatgacctaggacttgttttaggctataaataggcttccatcttcaacaaataccttcattcttcacttcacttcttttctt 41091164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 233
Target Start/End: Original strand, 44757581 - 44757673
Alignment:
Q  141 tgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctta 233  Q
    |||||||| | ||||| || ||||  ||| |||||||||| ||||||  ||||||||||| | |||||||| | |||||||| || |||||||    
T  44757581 tgactgtattaatgacctaggacttgttttaggctataaataggcttccatcttcaacaaataccttcattcttcacttcacctcttttctta 44757673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 50262041 - 50262133
Alignment:
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctt 232  Q
    ||||||||| | ||||| || ||||  ||| |||||||||| ||||||  ||||||||||| | |||||||| | |||||||| || ||||||    
T  50262041 ttgactgtattaatgacctaggacttgttttaggctataaataggcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 50262133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 66 - 211
Target Start/End: Complemental strand, 17647363 - 17647217
Alignment:
Q  66 tttcaccaatggtttggacggttagtggagttttaatgcattttta-acggttttgattgtggaacacattttatttgactgtacttatgacatatgact 164  Q
    ||||||||| |||| || ||||||||||||||| |||||||||||  |||||||||| | | ||| |||||||||||||||||| ||| ||| |||||||    
T  17647363 tttcaccaaaggttaggtcggttagtggagtttgaatgcattttttgacggttttgaatatagaatacattttatttgactgtaattaagacctatgact 17647264  T
Q  165 gatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
     |||||||||||||||||  ||||||||||||||| |||||||||||    
T  17647263 tatttaaggctataaaaattcttggatcttcaacattttccttcatt 17647217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 34953527 - 34953673
Alignment:
Q  55 ggacggtggcatttcaccaatggtttggacggttagtggagt-tttaatgcattttta-acggttttgattgtggaacacattttatttgactgtactta 152  Q
    ||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||  ||||||  ||||||||||||| ||||||||||||||| |||    
T  34953527 ggacgctggcgtttcaccaatggtttggacggttagtggagtgtttaatgcatttttggacggttg-gattgtggaacacgttttatttgactgtagtta 34953625  T
Q  153 tgacatatgactgatttaaggctataaaaaggcttggatcttcaacaa 200  Q
    |||  || |||| |||| |||||||||| ||| ||| |||||||||||    
T  34953626 tgatctaggacttattttaggctataaataggtttgcatcttcaacaa 34953673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 233
Target Start/End: Complemental strand, 40602911 - 40602737
Alignment:
Q  60 gtggcatttcaccaatggtttggacggttagtggagt-tttaatgcattttta-acggttttgattgtggaacacattttatttgactgtacttatgaca 157  Q
    ||||| ||||||||| |||||||||||||||||| || |||||||  |||||  ||||||  ||  |||||||||||||||||| ||| || ||||||      
T  40602911 gtggcgtttcaccaaaggtttggacggttagtggggtgtttaatgattttttggacggtta-gacggtggaacacattttatttaactatagttatgatc 40602813  T
Q  158 tatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctta 233  Q
    || ||||  ||||| |||||||| ||||||  |||||||||||  ||||||||| | |||||||| || |||||||    
T  40602812 taggacttgtttaatgctataaataggcttacatcttcaacaaactccttcattcttcacttcacctcttttctta 40602737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 169
Target Start/End: Complemental strand, 11647926 - 11647780
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgca-tttttaacggttttgat 122  Q
    |||||||||||||| ||||| ||  |||||| | | ||| ||||||||||| || | || ||||||||||||||| ||| || ||||| ||||||||||     
T  11647926 tataaaatccggaaaccctcggtaacattttagtctgtgacatttcaccaaaggatagggcggttagtggagtttgaatccattttttgacggttttgaa 11647827  T
Q  123 tgtggaacacattttatttgactgtacttatgacatatgactgattt 169  Q
    |||| ||||| |||||||||| |||| ||| ||| ||||||| ||||    
T  11647826 tgtgaaacacgttttatttgattgtaattaagacttatgacttattt 11647780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 211
Target Start/End: Complemental strand, 20516840 - 20516687
Alignment:
Q  51 ttttggacggtggcatttcaccaatggtttggacggttagtggagt-tttaatgcatttttaacggttttgattgtggaacacattttatttgactgtac 149  Q
    |||||||||||||| ||||||||| |||||||||||||||||  || ||||||| |||        ||| ||| ||||||||| |||||||||||||||     
T  20516840 ttttggacggtggcgtttcaccaaaggtttggacggttagtgatgtgtttaatgaatt--------tttggatggtggaacacgttttatttgactgtag 20516749  T
Q  150 ttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||  |  || || |  ||| |||||||||| ||||||| ||||||||||| ||||||||||    
T  20516748 ttaatatctaggatttgttttaggctataaataggcttgcatcttcaacaaattccttcatt 20516687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 44108170 - 44108114
Alignment:
Q  157 atatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattat 213  Q
    ||||||||  ||| ||||||||||||||||||||||||||||| |||||||||||||    
T  44108170 atatgacttgttttaggctataaaaaggcttggatcttcaacattttccttcattat 44108114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 13721565 - 13721377
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta--acggttttga 121  Q
    |||||||||||||| |||  |||  |||||||| ||||| | ||||||||| ||||  | ||||||||||||||||||| | |||||   ||||||||||    
T  13721565 tataaaatccggaaacccatagtaacattttggccggtgacgtttcaccaaaggttatgccggttagtggagttttaatacgttttttggacggttttga 13721466  T
Q  122 ttgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
     ||   ||||  ||||  |||||| | |  || || |||||||  ||| ||||||||||||||||||||||||||||| |||||||||||    
T  13721465 atgaaaaacatgttttccttgact-tccaaattacctatgacttgttttaggctataaaaaggcttggatcttcaacattttccttcatt 13721377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 16684299 - 16684352
Alignment:
Q  158 tatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||||  ||| ||||||||||||||||||||||||||||| |||||||||||    
T  16684299 tatgacttgttttaggctataaaaaggcttggatcttcaacattttccttcatt 16684352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 38551319 - 38551411
Alignment:
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctt 232  Q
    ||||||||||| ||||| || ||||  ||| |||||||||| ||||||  ||||||||||| | |||||||| | ||||||||||| ||||||    
T  38551319 ttgactgtactaatgacctaggacttgttttaggctataaataggcttccatcttcaacaaataccttcattcttcacttcacatcttttctt 38551411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 28780824 - 28780917
Alignment:
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctta 233  Q
    ||||||||| | |||||||||||||  ||| |||||||||| ||||||  ||||||||||| | |||||||| | ||| |||| || |||||||    
T  28780824 ttgactgtattaatgacatatgacttgttttaggctataaataggcttccatcttcaacaaataccttcattcttcacatcacctcttttctta 28780917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 40693035 - 40693088
Alignment:
Q  158 tatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||||  ||| |||||||||||||||| |||||||||||| |||||||||||    
T  40693035 tatgacttgttttaggctataaaaaggctgggatcttcaacattttccttcatt 40693088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 53269453 - 53269416
Alignment:
Q  171 aggctataaaaaggcttggatcttcaacaatttccttc 208  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  53269453 aggctataaaaaggcttggatcttcaacattttccttc 53269416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 53511604 - 53511551
Alignment:
Q  158 tatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||||  ||| |||||||||||||| |||||||||||||| |||||||||||    
T  53511604 tatgacttgttttaggctataaaaaggtttggatcttcaacattttccttcatt 53511551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 53632920 - 53633020
Alignment:
Q  66 tttcaccaatggtttggacggttagtggagttttaatgcattttt--aacggttttgattgtggaacacattttatttgactgtacttatgacatatgac 163  Q
    ||||||||| ||||||| |||||| |||||||||||||| |||||  ||||||||||| ||   |||||  |||  ||| |||||||||||||||| |||    
T  53632920 tttcaccaaaggtttggccggttaatggagttttaatgcgttttttgaacggttttgaatgacaaacacgctttcattgtctgtacttatgacataggac 53633019  T
Q  164 t 164  Q
    |    
T  53633020 t 53633020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 55612438 - 55612491
Alignment:
Q  158 tatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||||  ||| ||||||||||||| ||||||||||||||| |||||||||||    
T  55612438 tatgacttgttttaggctataaaaagacttggatcttcaacattttccttcatt 55612491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 232
Target Start/End: Complemental strand, 6963555 - 6963451
Alignment:
Q  128 aacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcct 227  Q
    ||||||||||  |||||| || | ||||| || |||| |||| |||||||||| ||||||  ||||||||||| | |||||||| | |||||||| || |    
T  6963555 aacacattttcattgactatagtaatgacctaggacttattttaggctataaataggcttccatcttcaacaaataccttcattcttcacttcacctctt 6963456  T
Q  228 ttctt 232  Q
    |||||    
T  6963455 ttctt 6963451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 31093195 - 31093103
Alignment:
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctt 232  Q
    ||||||||| | ||||| |||||||  ||| |||||||||| ||||||  ||||||||||| | |||||||| | |||||||| || ||||||    
T  31093195 ttgactgtattaatgacctatgacttgttttaggctataaataggcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 31093103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 47985748 - 47985788
Alignment:
Q  171 aggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  47985748 aggctataaaaaggtttggatcttcaacattttccttcatt 47985788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 52919506 - 52919562
Alignment:
Q  155 acatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    ||||||||||  |||  |||||||||||| ||||||||||||||| |||||||||||    
T  52919506 acatatgacttgtttttggctataaaaagacttggatcttcaacattttccttcatt 52919562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 44108300 - 44108225
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagtttt 99  Q
    |||||||||||||| |||||| |  |||||||| ||||| | ||||||||| |||| || ||||||||||||||||    
T  44108300 tataaaatccggaaaccctcaataacattttgggcggtgacgtttcaccaaaggttaggccggttagtggagtttt 44108225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 51889323 - 51889245
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaat 102  Q
    ||||||||| |||| ||||||||  |||||||| ||||| | ||||||||| ||||  | |||||||||||||||||||    
T  51889323 tataaaatctggaaaccctcagtaacattttggccggtgacgtttcaccaaaggttatgccggttagtggagttttaat 51889245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 55136742 - 55136661
Alignment:
Q  152 atgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctta 233  Q
    ||||| |||||||  ||| |||||||||| ||||||  ||||||||||| | |||||||| | |||||||| || |||||||    
T  55136742 atgacctatgacttgttttaggctataaataggctttcatcttcaacaaataccttcattcttcacttcacctcttttctta 55136661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 1602873 - 1602781
Alignment:
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctt 232  Q
    ||||||||| | ||||| || ||||  ||| |||||||||| ||||||  ||||||||||| | |||||||| | |||||||| || ||||||    
T  1602873 ttgactgtattaatgacctaggacttgttttaggctataaataggctttcatcttcaacaaataccttcattcttcacttcacctcttttctt 1602781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 39807359 - 39807419
Alignment:
Q  173 gctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctta 233  Q
    |||||||| ||||||  ||||||||||| |||||||||| | |||||||| || |||||||    
T  39807359 gctataaataggctttcatcttcaacaaattccttcattcttcacttcacctcttttctta 39807419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 45659590 - 45659622
Alignment:
Q  179 aaaaggcttggatcttcaacaatttccttcatt 211  Q
    ||||||||||||||||||||| |||||||||||    
T  45659590 aaaaggcttggatcttcaacattttccttcatt 45659622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 24687439 - 24687627
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta-acggttttgat 122  Q
    |||||||||||||| || ||||   |||||||| |||||   |||||| || |||| || |||||||||| |||| |||||||||||  ||||||||||     
T  24687439 tataaaatccggaaaccatcagaaacattttggccggtgatgtttcactaaaggttaggtcggttagtggtgtttgaatgcattttttgacggttttgaa 24687538  T
Q  123 tgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||||||| |||||||| | |||| ||| ||| ||||||| |||||||||||||||||||||| ||||||||||| |||||||||||    
T  24687539 tgtggaacacgttttatttaattgtaattaagacctatgacttatttaaggctataaaaaggcttagatcttcaacattttccttcatt 24687627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 233
Target Start/End: Complemental strand, 10907211 - 10907025
Alignment:
Q  53 ttggacggtggcatttcaccaatggtttggacggttagtggagt-tttaatgcattttta-acggttttgattgtggaacacattttatttgactgtact 150  Q
    |||||||||||| ||| ||||| |||||||||||||||||  || |||||||  |||||  ||||||  || ||||||| ||||||||||||| ||||||    
T  10907211 ttggacggtggcgtttaaccaaaggtttggacggttagtgaggtgtttaatgattttttggacggtta-gactgtggaaaacattttatttgattgtact 10907113  T
Q  151 t------atgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctta 233  Q
    |      |||||  |||||||||| ||||||||||||| | |||||||||||||||||||||||||| | |||||||| ||||||||||    
T  10907112 tgtacttatgaccgatgactgatt-aaggctataaaaatgtttggatcttcaacaatttccttcattcttcacttcacctcctttctta 10907025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 243
Target Start/End: Complemental strand, 19647120 - 19646929
Alignment:
Q  51 ttttggacggtggcatttcaccaatggtttggacggttagtggagt-tttaatgcatttttaacggttttg-attgtggaacacattttatttgactgta 148  Q
    |||||| ||||||| ||||||||| ||||||||  ||||||||||| |||||||||||  |     ||||| |  ||||||||| ||||| |||||||||    
T  19647120 ttttgggcggtggcgtttcaccaaaggtttggatagttagtggagtgtttaatgcattaat-----ttttgtacggtggaacacgttttacttgactgta 19647026  T
Q  149 cttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctt--attttgttcaa 243  Q
     ||||||  || ||||| |||||| ||||||| | ||||| |||||||||||||||||||||| |  ||||||| || ||||||  |||||||||||    
T  19647025 attatgatctaggactggtttaagactataaatatgcttgaatcttcaacaatttccttcattctttacttcacctcttttcttacattttgttcaa 19646929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 1377438 - 1377356
Alignment:
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcac 222  Q
    ||||||||||||||||||||||||| |||| |||||||||| ||||||  ||||||||||| || ||||||| | ||||||||    
T  1377438 ttgactgtacttatgacatatgacttattttaggctataaataggcttccatcttcaacaaatttcttcattcttcacttcac 1377356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 26792209 - 26792020
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta---acggttttg 120  Q
    |||||||||||||| |||| |||  |||||||| ||||| | ||||||||| ||||  | ||||||||||||||||||| | |||||    |||||||||    
T  26792209 tataaaatccggaaacccttagtaacattttggccggtgacgtttcaccaaaggttatgtcggttagtggagttttaatacgtttttttggacggttttg 26792110  T
Q  121 attgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    | ||   ||||  ||||  |||||| | |  || || |||||||  ||| ||||||||||||||||||||||||||||| |||||||||||    
T  26792109 aatgaaaaacaagttttccttgact-tccaaattacctatgacttgttttaggctataaaaaggcttggatcttcaacattttccttcatt 26792020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 204
Target Start/End: Original strand, 38257388 - 38257569
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttt--aacggttttga 121  Q
    |||||||||||||| ||||||||  |||||||| ||||| | ||||||||| ||||  | ||||||||||||||||||| | |||||   ||||||||||    
T  38257388 tataaaatccggaaaccctcagtaacattttggccggtgacgtttcaccaaaggttatgccggttagtggagttttaatacgttttttggacggttttga 38257487  T
Q  122 ttgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttc 204  Q
     ||   ||||| ||||  |||||| | |  || || ||||||| |||| ||||||||||||| ||||||| ||||||| ||||    
T  38257488 atgaaaaacacgttttccttgact-tccaaattacctatgacttattttaggctataaaaagacttggatgttcaacattttc 38257569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 199
Target Start/End: Original strand, 29332203 - 29332379
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttt--aacggttttga 121  Q
    |||||||||||||| ||||||||  |||||||| ||||| | ||||||||| ||||  | ||||||||||||||||||| | |||||   ||||||||||    
T  29332203 tataaaatccggaaaccctcagtaacattttggccggtgacgtttcaccaaaggttatgtcggttagtggagttttaatacgttttttggacggttttga 29332302  T
Q  122 ttgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaaca 199  Q
      |   ||||| ||||  |||||| | |  || || |||||||  ||| |||||||||||||||||||||||||||||    
T  29332303 acgaaaaacacgttttccttgact-tccaaattacctatgacttgttttaggctataaaaaggcttggatcttcaaca 29332379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 35584982 - 35585170
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta--acggttttga 121  Q
    |||||||||||||| ||||||||  |||||||| || || | ||||||||| ||||  | || |||||||||||||||| | |||||   ||||||||||    
T  35584982 tataaaatccggaaaccctcagtaacattttggtcgatgacgtttcaccaaaggttatgccgtttagtggagttttaatacgttttttggacggttttga 35585081  T
Q  122 ttgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
     ||   ||||| ||||  |||||| | |  || || |||||||  ||| |||||||||||| |||||||||||||||| |||||||||||    
T  35585082 atgaaaaacacgttttccttgact-tccaaattacctatgacttgttttaggctataaaaaagcttggatcttcaacattttccttcatt 35585170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 7255446 - 7255499
Alignment:
Q  158 tatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||||  ||| ||||||||||||||||||||||||||||| |||||||||||    
T  7255446 tatgacttgttttaggctataaaaaggcttggatcttcaacattttccttcatt 7255499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 37998883 - 37998695
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcatttttaa--cggttttga 121  Q
    |||||||||| ||| |||| |||  |||||||| ||||| | ||||||||| |||| || ||||||||||||||||||| | |||||    || ||||||    
T  37998883 tataaaatccagaaacccttagtaacattttggccggtgacgtttcaccaaaggttaggccggttagtggagttttaatacgttttttggccgattttga 37998784  T
Q  122 ttgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
     ||   ||||| ||||  |||||| | |  || || |||||||  ||| || |||||||||||||||||||||||||| |||||||||||    
T  37998783 atgaaaaacacgttttccttgact-tccaaatcacctatgacttgttttagactataaaaaggcttggatcttcaacattttccttcatt 37998695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 43749248 - 43749301
Alignment:
Q  158 tatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||||  ||| ||||||||||||||||||||||||||| |||||| ||||||    
T  43749248 tatgacttgttttaggctataaaaaggcttggatcttcaaaaatttctttcatt 43749301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 1906477 - 1906541
Alignment:
Q  42 ctcagttcattttggacggtggcatttcaccaatggtttggacggttagtggagt-tttaatgca 105  Q
    ||||||| ||||||||||||||| ||||| |||  |||||||||||| ||||||| |||||||||    
T  1906477 ctcagtttattttggacggtggcgtttcatcaaaagtttggacggtttgtggagtgtttaatgca 1906541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 1377539 - 1377468
Alignment:
Q  40 ccctcagttcattttggacggtggcatttcaccaatggtttggacggttagtggag-ttttaatgcattttt 110  Q
    |||||||||  |||||||||||||| ||||||||| |||||||  |||||||||||   |||||||||||||    
T  1377539 ccctcagtttcttttggacggtggcgtttcaccaaaggtttggctggttagtggagccattaatgcattttt 1377468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 1906604 - 1906670
Alignment:
Q  167 tttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctta 233  Q
    |||||| ||||||| ||||||| ||||||||||| ||||| |||| | |||||||| || |||||||    
T  1906604 tttaagactataaataggcttgaatcttcaacaagttcctgcattcttcacttcacctcttttctta 1906670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 108781 - 108728
Alignment:
Q  158 tatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||||  ||| |||||||||||||| | |||||||||||| |||||||||||    
T  108781 tatgacttgttttaggctataaaaaggttcggatcttcaacattttccttcatt 108728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 15032598 - 15032647
Alignment:
Q  158 tatgactgatttaaggctataaaaaggcttggatcttcaacaatttcctt 207  Q
    |||||||  ||| ||||||||||| ||||||||||||||||| |||||||    
T  15032598 tatgacttgttttaggctataaaatggcttggatcttcaacattttcctt 15032647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 46254954 - 46254861
Alignment:
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctta 233  Q
    ||||||||| | ||||| || ||||  ||| |||||||||| ||||||  ||||||||||| | |||||||| | |||||||| || |||||||    
T  46254954 ttgactgtattaatgacctaggacttgttttaggctataaataggcttccatcttcaacaaataccttcattcttcacttcacctcttttctta 46254861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 1852328 - 1852284
Alignment:
Q  51 ttttggacggtggcatttcaccaatggtttggacggttagtggag 95  Q
    ||||||||||||| |||||||||  ||||||| ||||||||||||    
T  1852328 ttttggacggtggaatttcaccataggtttggccggttagtggag 1852284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 233
Target Start/End: Original strand, 31326662 - 31326762
Alignment:
Q  133 attttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctt 232  Q
    |||||||||||||||| ||||||  || ||||  ||| |  ||||||| ||| ||| ||||||||||| || ||||||| | |||||||| || ||||||    
T  31326662 attttatttgactgtaattatgatttaggacttgttttatactataaataggtttgcatcttcaacaaatttcttcattcttcacttcacctcttttctt 31326761  T
Q  233 a 233  Q
    |    
T  31326762 a 31326762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 233
Target Start/End: Original strand, 8139 - 8252
Alignment:
Q  120 gattgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcactt 219  Q
    |||||| ||||||||||||||||| |||| ||||||  || ||||| |||||||||||||  ||||||||||||| |||||||||||||||| | |||||    
T  8139 gattgtagaacacattttatttgattgtatttatgatctaggactggtttaaggctataactaggcttggatctttaacaatttccttcattcttcactt 8238  T
Q  220 cacatcctttctta 233  Q
    ||| || |||||||    
T  8239 cacctcttttctta 8252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 233
Target Start/End: Original strand, 4258630 - 4258842
Alignment:
Q  21 ggaatataaaatccggaacccctcagttcattttggacggtggcatttcaccaatggtttggacggttagtgg-agttttaatgcatttttaacggtttt 119  Q
    ||||||||||||||| |||||||||||| ||||||| ||||||| ||||||||| ||||||| |||||||||| |   |||||||||||||   ||||      
T  4258630 ggaatataaaatccgtaacccctcagtttattttggccggtggcgtttcaccaaaggtttggtcggttagtggaaccattaatgcatttttggaggttag 4258729  T
Q  120 gattgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcactt 219  Q
     ||| |  || |  ||||  ||||||| |||||||||    ||||  |||||||||||||||||| |||||||||||||||||||| ||||| | |||||    
T  4258730 catt-taaaaaatgtttttattgactgaacttatgaccctggacttgtttaaggctataaaaaggtttggatcttcaacaatttccgtcattcttcactt 4258828  T
Q  220 cacatcctttctta 233  Q
    ||| || |||||||    
T  4258829 cacctcatttctta 4258842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 11646 - 11834
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta--acggttttga 121  Q
    |||||||||||||| | ||||||  |||||||| ||||| | ||||||||| ||||  | ||||||||||||||||||| | |||||   ||||||||||    
T  11646 tataaaatccggaaactctcagtaacattttggccggtgacgtttcaccaaaggttatgccggttagtggagttttaatactttttttggacggttttga 11745  T
Q  122 ttgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
     ||   ||||  ||||  || ||| | |  || || |||||||  ||||||||||||||||||||||||||||||||| |||||||||||    
T  11746 atgaaaaacaagttttcctttact-tccaaattacctatgacttgtttaaggctataaaaaggcttggatcttcaacattttccttcatt 11834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 24830970 - 24830780
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgcattttta----acggtttt 119  Q
    |||||||||| ||| ||||||||  ||||||||  |||| | ||||||||| |||| || ||||||||||||||||||| | |||||     ||||||||    
T  24830970 tataaaatccagaaaccctcagtaacattttggctggtgacgtttcaccaaaggttaggccggttagtggagttttaatacgttttttttggacggtttt 24830871  T
Q  120 gattgtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    || ||   ||||||||||  |||||| | |  || || |||||||  ||| ||||||||||||||||| ||||||||||| |||||||||||    
T  24830870 gaatgaaaaacacattttccttgacttt-caaattacctatgacttgttttaggctataaaaaggcttagatcttcaacattttccttcatt 24830780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 169
Target Start/End: Complemental strand, 41834915 - 41834769
Alignment:
Q  25 tataaaatccggaacccctcagtt-cattttggacggtggcatttcaccaatggtttggacggttagtggagttttaatgca-tttttaacggttttgat 122  Q
    |||||||||||||| ||||| ||  |||||| | | ||| ||||||||||| || | || ||||||||||||||| ||| || ||||| ||||||||||     
T  41834915 tataaaatccggaaaccctcggtaacattttagtctgtgacatttcaccaaaggatagggcggttagtggagtttgaatccattttttgacggttttgaa 41834816  T
Q  123 tgtggaacacattttatttgactgtacttatgacatatgactgattt 169  Q
    |||| ||||| |||||||||| |||| ||| ||| ||||||| ||||    
T  41834815 tgtgaaacacgttttatttgattgtaattaagacttatgacttattt 41834769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 23421005 - 23421058
Alignment:
Q  158 tatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    |||||||  ||| ||||||||||||||||||||||||||||| |||||||||||    
T  23421005 tatgactttttttaggctataaaaaggcttggatcttcaacattttccttcatt 23421058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 39318644 - 39318736
Alignment:
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctt 232  Q
    ||||||||| | ||||| |||||||  ||| |||||||||| ||||||  ||||||||||| | |||||||||| |||||||| || ||||||    
T  39318644 ttgactgtattaatgacctatgacttgttttaggctataaataggcttccatcttcaacaaataccttcattattcacttcacctcttttctt 39318736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 31701093 - 31701185
Alignment:
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctt 232  Q
    ||||||||| | ||||| || ||||  ||| |||||||||| ||||||  ||||||||||| | |||||||| | |||||||| || ||||||    
T  31701093 ttgactgtagtaatgacctaggacttgttttaggctataaataggcttccatcttcaacaaataccttcattcttcacttcacctcttttctt 31701185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 427216 - 427314
Alignment:
Q  124 gtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcac 222  Q
    ||||||||| ||||||||||||| ||||||||  || || || | |||||||||||| ||||||| |||||||||||||||||||||| | ||||||||    
T  427216 gtggaacacgttttatttgactgcacttatgatctaggaatggtctaaggctataaataggcttgcatcttcaacaatttccttcattcttcacttcac 427314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 233
Target Start/End: Complemental strand, 52027 - 51837
Alignment:
Q  42 ctcagttcattttggacggtggcatttcaccaatggtttggacggttagtggagt-tttaatgcattttta-acggttttgattgtggaacacattttat 139  Q
    |||||||  |||||||||||||| || |||||| ||||||||||||||||| ||| |||| |||||||||  || |||  |||  |||||||||||||||    
T  52027 ctcagttttttttggacggtggcgttccaccaaaggtttggacggttagtgaagtgtttattgcatttttggacagttg-gatgatggaacacattttat 51929  T
Q  140 ttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcacatcctttctta 233  Q
    |||| |||| ||||||  || ||||  ||| |||||||||| ||| ||| ||||||||||  |||||||||| |  ||||||| || |||||||    
T  51928 ttgattgtagttatgatctaggacttgttttaggctataaataggtttgcatcttcaaca--ttccttcattcttaacttcacctcttttctta 51837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 18980 - 19152
Alignment:
Q  51 ttttggacggtggcatttcaccaatggtttggacggttagtggagttttaat--gcatttttaacggttttgattgtggaacacattttatttgactgta 148  Q
    |||| ||||||||| |||||||||  |||||| |||||||||||||||||||  || ||||   |||  |||| ||   ||||||| ||  |||||||||    
T  18980 ttttcgacggtggcgtttcaccaaatgtttggtcggttagtggagttttaatacgctttttggtcggcattgaatgacaaacacatgttcattgactgta 19079  T
Q  149 cttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttca 221  Q
    |||||||| || ||||  ||| |||||||||| |||||   ||||||||||| |||||||||| | |||||||    
T  19080 cttatgacctaagacttgttttaggctataaataggctctcatcttcaacaaattccttcattcttcacttca 19152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 17273 - 17371
Alignment:
Q  124 gtggaacacattttatttgactgtacttatgacatatgactgatttaaggctataaaaaggcttggatcttcaacaatttccttcattatgcacttcac 222  Q
    |||||||| ||||||||||||| || ||||||  || ||||  ||| |||||||||| ||| ||| ||||||||||| ||| |||||| | ||||||||    
T  17273 gtggaacatattttatttgactatagttatgatctaggacttgttttaggctataaataggtttgtatcttcaacaaattctttcattcttcacttcac 17371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 12264 - 12224
Alignment:
Q  171 aggctataaaaaggcttggatcttcaacaatttccttcatt 211  Q
    ||||||||||||| ||||||||||||||| |||||| ||||    
T  12264 aggctataaaaagacttggatcttcaacattttcctgcatt 12224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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