View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18554_low_3 (Length: 511)
Name: NF18554_low_3
Description: NF18554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18554_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 507
Target Start/End: Original strand, 4364429 - 4364918
Alignment:
| Q |
18 |
agtatctaaattactctgtaacctcaaaattgatgaagtacttactatgataacattacccaaataatctgtaaatctgtcacgaaagcttctcatataa |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || || ||||| ||||||||||||||| |
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| T |
4364429 |
agtatctaaattactctgtaacctcaaaattgatgaagtacttactatgataacattgcccaaataatctgtgaacctatcacggaagcttctcatataa |
4364528 |
T |
|
| Q |
118 |
tcggagtagacttgaagtggagttcttcctgctagaacaggcactgaatcacatcccaatgagatgtattctggatttcttcttcctaatttgtctgtgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4364529 |
tcggagtagacttgaagtggagttcttcctgctagaacaggcactgaatcacatcccaatgagatgtattctggatttcttcttcctaatttgtctgtgt |
4364628 |
T |
|
| Q |
218 |
aaaccaactcagggttcttcctgatttcttctagtacccatggtggtagaggaatgctataaaatgcaatacaaacaaattattagtctttga--ttttt |
315 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||| |
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| T |
4364629 |
aaaccaactcagggttcttcctgatttcttctagcacccatggtggtagaggaatgctataaaatgcaatacaaaccaa--attagtctttgattttttt |
4364726 |
T |
|
| Q |
316 |
tatatttggtctagttcaatattttgtttaacaagagtgatagatatttgcagacctgcaagagtcaccaacatttccaccacattgatgaaaagacata |
415 |
Q |
| |
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||| |||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4364727 |
tatttttggtctagttgaatattttgtttaacaagagtgatagatatttccatacctgcaagagtcaccaacatttccaccacattgatgaaaagacata |
4364826 |
T |
|
| Q |
416 |
acaatttgaagcttcaaaccatgtttttgtaccatctgaacaagctcagcataagcttcccaattatacttcattggaccatattcttcgac |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
4364827 |
acaatttgaagcttcaaaccatgtttttgtaccatctgaacaagttcagcataagcttcccaattatacttcattggaccatctttttcgac |
4364918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 57 - 507
Target Start/End: Original strand, 4372060 - 4372511
Alignment:
| Q |
57 |
acttactatgataacattacccaaataatctgtaaatctgtcacgaaagcttctcatataatcggagtagacttgaagtggagttcttcctgctagaaca |
156 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4372060 |
acttactatgataacattgcccaaataatctgtgaacctatcacggaagcttctcatataatcggagtagacttgaagtggagttcttcctgctagaaca |
4372159 |
T |
|
| Q |
157 |
ggcactgaatcacatcccaatgagatgtattctggatttcttcttcctaatttgtctgtgtaaaccaactcagggttcttcctgatttcttctagtaccc |
256 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4372160 |
ggcactgaatcacatcccaatgagatgtattctggatttcttcttcctaatttgtctgtgtaaaccaactcagggttcttcctgatttcttctagcaccc |
4372259 |
T |
|
| Q |
257 |
atggtggtagaggaatgctataaaatgcaatacaaacaaattattagtctttga---ttttttatatttggtctagttcaatattttgtttaacaagagt |
353 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
4372260 |
atggtggtagaggaatgctataaaatgcaatacaaaccaa--attagtctttgatttttttttatttttggtctagttgaatattttgtttaacaagagt |
4372357 |
T |
|
| Q |
354 |
gatagatatttgcagacctgcaagagtcaccaacatttccaccacattgatgaaaagacataacaatttgaagcttcaaaccatgtttttgtaccatctg |
453 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4372358 |
gatagatatttccatacctgcaagagtcaccaacatttccaccacattgatgaaaagacataacaatttgaagcttcaaaccatgtttttgtaccatctg |
4372457 |
T |
|
| Q |
454 |
aacaagctcagcataagcttcccaattatacttcattggaccatattcttcgac |
507 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| || |||||| |
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|
| T |
4372458 |
aacaagttcagcataagcttcccaattatacttcattggaccatctttttcgac |
4372511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 91 - 271
Target Start/End: Complemental strand, 41043052 - 41042872
Alignment:
| Q |
91 |
aatctgtcacgaaagcttctcatataatcggagtagacttgaagtggagttcttcctgctagaacaggcactgaatcacatcccaatgagatgtattctg |
190 |
Q |
| |
|
||||||||||||||||| ||||| || || | || ||||| || |||||||||||| |||||||||||||||||||||||||||||| ||||| || | |
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| T |
41043052 |
aatctgtcacgaaagctcctcatgtagtcagcatacacttggaggggagttcttccttttagaacaggcactgaatcacatcccaatgatatgtactcag |
41042953 |
T |
|
| Q |
191 |
gatttcttcttcctaatttgtctgtgtaaaccaactcagggttcttcctgatttcttctagtacccatggtggtagaggaa |
271 |
Q |
| |
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||||||| || ||| || ||||||||||||| | ||||||||||| ||||| ||||| | |||||||| |||||||||| |
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| T |
41042952 |
gatttctcctccctgatctgtctgtgtaaacaatgtcagggttcttgctgatctcttccatcacccatggaggtagaggaa |
41042872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 369 - 486
Target Start/End: Complemental strand, 41042770 - 41042653
Alignment:
| Q |
369 |
acctgcaagagtcaccaacatttccaccacattgatgaaaagacataacaatttgaagcttcaaaccatgtttttgtaccatctgaacaagctcagcata |
468 |
Q |
| |
|
||||||| || || ||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||| |||||||||||||| |
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| T |
41042770 |
acctgcaggaatctccaacatttcctccacactgatgaaaagacataacaacttgaagcttcaaaccatgcaattgcaccatctgcacaagctcagcata |
41042671 |
T |
|
| Q |
469 |
agcttcccaattatactt |
486 |
Q |
| |
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||||||||| |||||||| |
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| T |
41042670 |
agcttcccagttatactt |
41042653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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