View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18554_low_4 (Length: 506)
Name: NF18554_low_4
Description: NF18554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18554_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 3 - 493
Target Start/End: Complemental strand, 10997537 - 10997047
Alignment:
| Q |
3 |
caatccaatttgcacatttttaccatggcaagactctcctccaccatcgaaaccccttaccaacgccatagacacaacgatcgccgccgcactcccgact |
102 |
Q |
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| T |
10997537 |
caatccaatttgcacatttttaccatggcaagactctcctccaccatcgaaaccccttaccaacgccatagacacaacgatcgccgccgcactcccgact |
10997438 |
T |
|
| Q |
103 |
cagatgtctccaacgatcgccctcgctaccgtcgtagccctagctacgactcctacgacgatcgtcacacagaccgccaccgtcgccgttcaatatcccc |
202 |
Q |
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| T |
10997437 |
ccgatgtctccaacgatcgccctcgctaccgtcgtagccctagctacgactcctacgacgatcgtcacacagaccgccaccgtcgccgttcaatatcccc |
10997338 |
T |
|
| Q |
203 |
cgaaaaccgaaaccctagacaccacgataacggaaattcaaacggaaaccatcttccaaagaaattcggacaccgtaataacggttcctatctcgaccgc |
302 |
Q |
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| T |
10997337 |
tgaaaaccgaaaccctagacaccacgataacggaaattcaaacggaaaccatcttccaaagaaattcggacaccgtaataacggttcctatctcgaccgc |
10997238 |
T |
|
| Q |
303 |
aacgattctcggcgtaacgagtctgaatctgatgaagaattgaagggattgagttatgaagagtatcgcagattgaagaggcagaagatgaggaaatcgt |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10997237 |
aacgattctcggcgtaacgagtctgaatctgatgaagaattgaagggattgagttatgaagagtatcgcagattgaagaggcagaagatgaggaaatcgt |
10997138 |
T |
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| Q |
403 |
tgaagcactgtatttggaatgttacgccgagtcctccgagacgtgagaacgatgatcttgaagattatggtaaacctgaagaaatttctga |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10997137 |
tgaagcactgtatttggaatgttacgccgagtcctccgagacgcgagaacgatgatcttgaagattatggtaaacctgaagaaatttctga |
10997047 |
T |
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