View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18554_low_6 (Length: 408)
Name: NF18554_low_6
Description: NF18554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18554_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 23 - 393
Target Start/End: Original strand, 30415443 - 30415813
Alignment:
| Q |
23 |
cgtctttctcttgcttctgctaagtctccatttcctcaacaactcagaaacctcactctcatctcctgataaatctccaacttgtaagtcattatgttct |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30415443 |
cgtctttctcttgcttctgctaagtctccatttcctcaacaactcagaaacttcactctcatctcctgataaatctccaacttgtaagtctttatgttct |
30415542 |
T |
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| Q |
123 |
tcacttatcacttccctcaccctttgctcactaaaagtttcttgtgtgacaagaaagatgagtggcctgtaacaatataagagaagcataagtagcacaa |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
30415543 |
tcacttatcacttccctcaccctttgctcactaaaagtttcttgtgtgacaagaaagatgagtggcctgtaacaatataagagaagcataagtagcacga |
30415642 |
T |
|
| Q |
223 |
tgtacacatataatgacacccaaacataaaaagtccacttccaatttcgaattaactctttagcccaaggtaaatgggagtttataacaatttcagcttc |
322 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30415643 |
tgtacacatataatgacacccaaacatagaaagtccacttccaatttcgaattaactctttagcccaaggtaaatgggagtttataacaatttcagcttc |
30415742 |
T |
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| Q |
323 |
atatagttgtggaagagatgaagttcctgctcttggatgcagggttactcttatagcatttgttctttgat |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30415743 |
atatagttgtggaagagatgaagttcctgctcttggatgcagggttactcttatagcatttgttctttgat |
30415813 |
T |
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