View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18554_low_7 (Length: 352)

Name: NF18554_low_7
Description: NF18554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18554_low_7
NF18554_low_7
[»] chr7 (5 HSPs)
chr7 (1-336)||(46936758-46937088)
chr7 (31-134)||(36853049-36853151)
chr7 (32-110)||(24547692-24547770)
chr7 (32-86)||(46766091-46766145)
chr7 (32-92)||(35169991-35170049)
[»] chr1 (7 HSPs)
chr1 (192-328)||(36634994-36635133)
chr1 (202-329)||(36639699-36639826)
chr1 (52-136)||(16979579-16979663)
chr1 (29-88)||(420501-420560)
chr1 (29-110)||(974465-974546)
chr1 (38-92)||(15954009-15954063)
chr1 (32-84)||(14303963-14304015)
[»] chr5 (6 HSPs)
chr5 (31-140)||(35035586-35035695)
chr5 (32-90)||(16230755-16230813)
chr5 (43-92)||(16252635-16252684)
chr5 (32-91)||(8012027-8012086)
chr5 (38-84)||(36639753-36639799)
chr5 (97-133)||(43207914-43207950)
[»] chr8 (4 HSPs)
chr8 (32-90)||(26762885-26762943)
chr8 (32-92)||(30011734-30011794)
chr8 (32-91)||(26815559-26815620)
chr8 (56-92)||(40694463-40694499)
[»] chr3 (6 HSPs)
chr3 (41-91)||(43244854-43244904)
chr3 (39-83)||(42336425-42336469)
chr3 (29-90)||(48553065-48553124)
chr3 (95-134)||(45161775-45161814)
chr3 (42-92)||(7928767-7928817)
chr3 (54-92)||(33262587-33262624)
[»] chr4 (3 HSPs)
chr4 (32-109)||(6468691-6468768)
chr4 (52-90)||(6959316-6959354)
chr4 (55-87)||(41251669-41251701)
[»] scaffold0312 (1 HSPs)
scaffold0312 (29-88)||(10011-10070)
[»] chr2 (4 HSPs)
chr2 (30-135)||(10231798-10231903)
chr2 (40-90)||(26804046-26804096)
chr2 (32-133)||(5262383-5262484)
chr2 (45-86)||(9529531-9529572)
[»] chr6 (5 HSPs)
chr6 (38-110)||(4593883-4593955)
chr6 (31-91)||(8782990-8783050)
chr6 (53-92)||(6893758-6893797)
chr6 (56-108)||(29872548-29872599)
chr6 (64-132)||(33786196-33786264)


Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 46937088 - 46936758
Alignment:
Q  1 tttatgctgtgaataaattataatcatcacatttgattttaatcataattgcttctaaagtcacacatatgattgattgtgatttgttgacacgataaaa 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46937088 tttatgctgtcaataaattataatcatcacatttgattttaatcataattgcttctaaagtcacacatatgattgattgtgatttgttgacacgataaaa 46936989  T
Q  101 ctttttacaccaagagtgcatcaaaattaaactcttagtatagtataaataacttttccaagagttgttaaatttgtaatattattatatatttgcaggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46936988 ctttttacaccaagagtgcatcaaaattaaactcttagtata-----aataacttttccaagagttgttaaatttgtaatattattatatatttgcaggg 46936894  T
Q  201 tttgaacaacctattatggcatgttgtggatatggaggtccaccattgaactatgacagtagagtcacttgtgggaacacaaagaccttcaatggaacca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46936893 tttgaacaacctattatggcatgttgtggatatggaggtccaccattgaactatgacagtagagtcacttgtgggaacacaaagaccttcaatggaacca 46936794  T
Q  301 caattacagcaaaaggttgtaatgatagttctgagt 336  Q
    ||||||||||||||||||||||||||||||||||||    
T  46936793 caattacagcaaaaggttgtaatgatagttctgagt 46936758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 36853151 - 36853049
Alignment:
Q  31 atttgattttaatcataattgcttctaaagtcacacatatgattgattgtgatttgttgacacgataaaactttttacaccaagagtgcatcaaaattaa 130  Q
    |||||||| ||||||||| | |||||||||||||||||||||||| |||||||||  |||||   | |||||||||| ||| | |||| |||||||||||    
T  36853151 atttgattataatcataactacttctaaagtcacacatatgattggttgtgatttactgacaatgt-aaactttttataccgacagtgtatcaaaattaa 36853053  T
Q  131 actc 134  Q
    ||||    
T  36853052 actc 36853049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 24547770 - 24547692
Alignment:
Q  32 tttgattttaatcataattgcttctaaagtcacacatatgattgattgtgatttgttgacacgataaaactttttacac 110  Q
    ||||| || |||||||| | |||||||| ||||| ||||||||| ||||||||| ||||||   |||||||||||||||    
T  24547770 tttgacttcaatcataactacttctaaaatcacagatatgattggttgtgatttattgacagtgtaaaactttttacac 24547692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 46766091 - 46766145
Alignment:
Q  32 tttgattttaatcataattgcttctaaagtcacacatatgattgattgtgatttg 86  Q
    ||||| ||||||||||  |||||||||||||||||||||||||| || |||||||    
T  46766091 tttgactttaatcatacctgcttctaaagtcacacatatgattggttatgatttg 46766145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 35169991 - 35170049
Alignment:
Q  32 tttgattttaatcataattgcttctaaagtcacacatatgattgattgtgatttgttgaca 92  Q
    ||||| ||||||||||| | |||||||||||||||  ||||||| || |||||||||||||    
T  35169991 tttgactttaatcataactacttctaaagtcacac--atgattggttatgatttgttgaca 35170049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 192 - 328
Target Start/End: Original strand, 36634994 - 36635133
Alignment:
Q  192 tttgcagggtttgaacaacctattatggcatgttgtggatatggaggtccaccattgaactatgacagtagagtcacttgtgg--gaac-acaaagacct 288  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||||||| ||||| |||||||||||| | ||  |||||||   ||| |||| || ||    
T  36634994 tttgcagggtttgaacaaccttttatggcttgctgtggatatggaggtccgccatttaactatgacagtcgcgtttcttgtggactaacaacaacgatct 36635093  T
Q  289 tcaatggaaccacaattacagcaaaaggttgtaatgatag 328  Q
    | ||||| ||||||||||||||||||||||| ||||||||    
T  36635094 tgaatgggaccacaattacagcaaaaggttgcaatgatag 36635133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 329
Target Start/End: Original strand, 36639699 - 36639826
Alignment:
Q  202 ttgaacaacctattatggcatgttgtggatatggaggtccaccattgaactatgacagtagagtcacttgtgggaacacaaagaccttcaatggaaccac 301  Q
    ||||||| || |||||||| ||||||||||||||||| || |||||||||||||||||| | ||   ||||||  | ||||||  ||| ||||| ||||     
T  36639699 ttgaacagccgattatggcttgttgtggatatggaggcccgccattgaactatgacagtcgcgttttttgtggagaaacaaaggtcttaaatggcaccat 36639798  T
Q  302 aattacagcaaaaggttgtaatgatagt 329  Q
    | ||||||| |||||||| ||| |||||    
T  36639799 agttacagccaaaggttgcaataatagt 36639826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 16979663 - 16979579
Alignment:
Q  52 cttctaaagtcacacatatgattgattgtgatttgttgacacgataaaactttttacaccaagagtgcatcaaaattaaactctt 136  Q
    |||||||||||||| ||||  ||| ||||||||||||||||   |||| ||||||||||  | |||| |||||||||||||||||    
T  16979663 cttctaaagtcacatatattgttggttgtgatttgttgacagtgtaaatctttttacactgacagtgtatcaaaattaaactctt 16979579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 420560 - 420501
Alignment:
Q  29 acatttgattttaatcataattgcttctaaagtcacacatatgattgattgtgatttgtt 88  Q
    |||||||| ||||| ||||||| |||| ||| ||||||||||||||||||||| ||||||    
T  420560 acatttgactttaaccataattacttcaaaaatcacacatatgattgattgtgctttgtt 420501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 974465 - 974546
Alignment:
Q  29 acatttgattttaatcataattgcttctaaagtcacacatatgattgattgtgatttgttgacacgataaaactttttacac 110  Q
    |||||||||||||| ||||| | |||| ||| ||||||||||||||||||||  |||||| | |   |||||||||||||||    
T  974465 acatttgattttaaccataactacttcaaaaatcacacatatgattgattgtactttgttcagagtgtaaaactttttacac 974546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 15954063 - 15954009
Alignment:
Q  38 tttaatcataattgcttctaaagtcacacatatgattgattgtgatttgttgaca 92  Q
    ||||||||||| | |||||||||||||| ||| |||||||| |||||| ||||||    
T  15954063 tttaatcataactacttctaaagtcacaaatacgattgattctgatttattgaca 15954009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 14303963 - 14304015
Alignment:
Q  32 tttgattttaatcataattgcttctaaagtcacacatatgattgattgtgatt 84  Q
    ||||| ||||||||||| | ||| ||||||||| |||||||||| ||||||||    
T  14303963 tttgactttaatcataactacttttaaagtcactcatatgattggttgtgatt 14304015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 35035586 - 35035695
Alignment:
Q  31 atttgattttaatcataattgcttctaaagtcacacatatgattgattgtgatttgttgacacgataaaactttttacaccaagagtgcatcaaaattaa 130  Q
    |||||||||||||||||| | |||||||| ||||||||||||||| |||||||||  |||||   ||||| |||||| ||| | |||| |||||||||||    
T  35035586 atttgattttaatcataactacttctaaaatcacacatatgattggttgtgatttactgacaatgtaaaattttttataccgacagtgtatcaaaattaa 35035685  T
Q  131 actcttagta 140  Q
    |||| |||||    
T  35035686 actcatagta 35035695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 16230813 - 16230755
Alignment:
Q  32 tttgattttaatcataattgcttctaaagtcacacatatgattgattgtgatttgttga 90  Q
    ||||| ||||||||||| | |||||||| ||| ||||||||||| ||||||||||||||    
T  16230813 tttgactttaatcataactacttctaaaatcaaacatatgattggttgtgatttgttga 16230755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 16252635 - 16252684
Alignment:
Q  43 tcataattgcttctaaagtcacacatatgattgattgtgatttgttgaca 92  Q
    |||||||  |||||||||||||||| ||||||||||||||| ||||||||    
T  16252635 tcataatcacttctaaagtcacacacatgattgattgtgatgtgttgaca 16252684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 8012027 - 8012086
Alignment:
Q  32 tttgattttaatcataattgcttctaaagtcacacatatgattgattgtgatttgttgac 91  Q
    ||||||||| ||||||| |  || |||||||||  |||||||||||||||||||||||||    
T  8012027 tttgatttttatcataactatttttaaagtcacgtatatgattgattgtgatttgttgac 8012086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 36639799 - 36639753
Alignment:
Q  38 tttaatcataattgcttctaaagtcacacatatgattgattgtgatt 84  Q
    ||||||||||| | ||||||||||||||||||||||||  |||||||    
T  36639799 tttaatcataactacttctaaagtcacacatatgattgcatgtgatt 36639753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 43207914 - 43207950
Alignment:
Q  97 aaaactttttacaccaagagtgcatcaaaattaaact 133  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  43207914 aaaactttttacaccaaaagtgcatgaaaattaaact 43207950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 26762885 - 26762943
Alignment:
Q  32 tttgattttaatcataattgcttctaaagtcacacatatgattgattgtgatttgttga 90  Q
    ||||| ||||||||||||| |||||||||||| ||| ||||||||||||||||| ||||    
T  26762885 tttgactttaatcataattacttctaaagtcatacaaatgattgattgtgattttttga 26762943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 30011794 - 30011734
Alignment:
Q  32 tttgattttaatcataattgcttctaaagtcacacatatgattgattgtgatttgttgaca 92  Q
    ||||| || |||||||| | |||||||| |||||||||||||||||| |||||||||||||    
T  30011794 tttgacttcaatcataactacttctaaaatcacacatatgattgattttgatttgttgaca 30011734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 26815559 - 26815620
Alignment:
Q  32 tttgattttaatcataattgcttctaaagtc--acacatatgattgattgtgatttgttgac 91  Q
    ||||||||| ||||||| |  ||||||||||  |||||||||||||||||||||||||||||    
T  26815559 tttgatttttatcataactatttctaaagtcgcacacatatgattgattgtgatttgttgac 26815620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 40694499 - 40694463
Alignment:
Q  56 taaagtcacacatatgattgattgtgatttgttgaca 92  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  40694499 taaagtcacacacatgattgattgtgttttgttgaca 40694463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 43244854 - 43244904
Alignment:
Q  41 aatcataattgcttctaaagtcacacatatgattgattgtgatttgttgac 91  Q
    |||||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  43244854 aatcataatcacttctaaagtcacacatattattgattgtgatttgttgac 43244904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 42336425 - 42336469
Alignment:
Q  39 ttaatcataattgcttctaaagtcacacatatgattgattgtgat 83  Q
    ||||||||||||  |||||||||||||||||||||||||||||||    
T  42336425 ttaatcataattaattctaaagtcacacatatgattgattgtgat 42336469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 48553124 - 48553065
Alignment:
Q  29 acatttgattttaatcataattgcttctaaagtcacacatatgattgattgtgatttgttga 90  Q
    |||||||| |||||||||||   ||||||||||||||  |||||||||||||||||||||||    
T  48553124 acatttgaatttaatcataaaaacttctaaagtcaca--tatgattgattgtgatttgttga 48553065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 134
Target Start/End: Original strand, 45161775 - 45161814
Alignment:
Q  95 ataaaactttttacaccaagagtgcatcaaaattaaactc 134  Q
    ||||||||||||||||||||||| ||| ||||||||||||    
T  45161775 ataaaactttttacaccaagagttcattaaaattaaactc 45161814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 7928767 - 7928817
Alignment:
Q  42 atcataattgcttctaaagtcacacatatgattgattgtgatttgttgaca 92  Q
    ||||||| | ||||||||||||||||||||||||| || ||| ||||||||    
T  7928767 atcataactacttctaaagtcacacatatgattgagtgggatctgttgaca 7928817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 33262624 - 33262587
Alignment:
Q  54 tctaaagtcacacatatgattgattgtgatttgttgaca 92  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  33262624 tctaaagtcacacatatgattgattgtg-tttgttgaca 33262587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 6468691 - 6468768
Alignment:
Q  32 tttgattttaatcataattgcttctaaagtcacacatatgattgattgtgatttgttgacacgataaaactttttaca 109  Q
    ||||| ||||||| ||||| |||||||||||| |||||||  || ||||||||||||||||   ||||||||||||||    
T  6468691 tttgactttaatcttaattacttctaaagtcatacatatgcgtggttgtgatttgttgacagtgtaaaactttttaca 6468768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 6959316 - 6959354
Alignment:
Q  52 cttctaaagtcacacatatgattgattgtgatttgttga 90  Q
    ||||| |||||||||||||||||| ||||||||||||||    
T  6959316 cttcttaagtcacacatatgattggttgtgatttgttga 6959354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 41251701 - 41251669
Alignment:
Q  55 ctaaagtcacacatatgattgattgtgatttgt 87  Q
    ||||||| |||||||||||||||||||||||||    
T  41251701 ctaaagttacacatatgattgattgtgatttgt 41251669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 10011 - 10070
Alignment:
Q  29 acatttgattttaatcataattgcttctaaagtcacacatatgattgattgtgatttgtt 88  Q
    |||||||| ||||| ||||||| |||| ||| ||||||||||||||||||||| ||||||    
T  10011 acatttgactttaaccataattacttcaaaaatcacacatatgattgattgtgctttgtt 10070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 10231903 - 10231798
Alignment:
Q  30 catttgattttaatcataattgcttctaaagtcacacatatgattgattgtgatttgttgacacgataaaactttttacaccaagagtgcatcaaaatta 129  Q
    ||||||| ||| ||||||| |  ||||||| |||||||||||||||||||| || ||| ||||   |||||||||||||||  | | |  ||||||||||    
T  10231903 catttgacttttatcataactatttctaaaatcacacatatgattgattgtaatatgtggacagtgtaaaactttttacactgacaatatatcaaaatta 10231804  T
Q  130 aactct 135  Q
    ||||||    
T  10231803 aactct 10231798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 26804096 - 26804046
Alignment:
Q  40 taatcataattgcttctaaagtcacacatatgattgattgtgatttgttga 90  Q
    |||| |||||| |||||||||||| | ||| ||||||||||||||||||||    
T  26804096 taattataattacttctaaagtcagagataagattgattgtgatttgttga 26804046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 133
Target Start/End: Complemental strand, 5262484 - 5262383
Alignment:
Q  32 tttgattttaatcataattgcttctaaagtcacacatatgattgattgtgatttgttgacacgataaaactttttacaccaagagtgcatcaaaattaaa 131  Q
    ||||| ||| ||||||| | |||| ||| |||||||||||| || |||||| || || |||    |||||||||||||| || |||| ||||||||||||    
T  5262484 tttgactttgatcataactacttcgaaactcacacatatgaatgtttgtgacttattaacagtgaaaaactttttacactaacagtgtatcaaaattaaa 5262385  T
Q  132 ct 133  Q
    ||    
T  5262384 ct 5262383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 9529572 - 9529531
Alignment:
Q  45 ataattgcttctaaagtcacacatatgattgattgtgatttg 86  Q
    |||||| ||| |||||||||||||||||||| ||||||||||    
T  9529572 ataattacttttaaagtcacacatatgattggttgtgatttg 9529531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 4593883 - 4593955
Alignment:
Q  38 tttaatcataattgcttctaaagtcacacatatgattgattgtgatttgttgacacgataaaactttttacac 110  Q
    ||||||| ||| | |||||||||| |  |||||||||| |||||||||| ||||||  |||||||||||||||    
T  4593883 tttaatcttaactacttctaaagtaaatcatatgattggttgtgatttgctgacaccgtaaaactttttacac 4593955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 8782990 - 8783050
Alignment:
Q  31 atttgattttaatcataattgcttctaaagtcacacatatgattgattgtgatttgttgac 91  Q
    |||||| ||||||||||| | |||| ||||||| | ||||||||| |||||||||||||||    
T  8782990 atttgactttaatcataactacttcaaaagtcatatatatgattggttgtgatttgttgac 8783050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 6893797 - 6893758
Alignment:
Q  53 ttctaaagtcacacatatgattgattgtgatttgttgaca 92  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  6893797 ttctaaagtcacacatatgattgactgtaatttgttgaca 6893758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 29872548 - 29872599
Alignment:
Q  56 taaagtcacacatatgattgattgtgatttgttgacacgataaaactttttac 108  Q
    |||||||||||||||||||| ||||||||| ||||||   |||||||||||||    
T  29872548 taaagtcacacatatgattggttgtgattt-ttgacagtgtaaaactttttac 29872599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 33786196 - 33786264
Alignment:
Q  64 cacatatgattgattgtgatttgttgacacgataaaactttttacaccaagagtgcatcaaaattaaac 132  Q
    ||||||| ||||||||||||||||||| |  ||||||||||||| ||| |  ||  |||||||||||||    
T  33786196 cacatataattgattgtgatttgttgatagtataaaactttttataccgacggtttatcaaaattaaac 33786264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University