View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18554_low_8 (Length: 292)
Name: NF18554_low_8
Description: NF18554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18554_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 277
Target Start/End: Original strand, 19208764 - 19209025
Alignment:
| Q |
16 |
attaaaggaggttattattaaacaaagtggtactaatggtcagtttataattgtctccgacgggatttgaatttcgtccctcccagttacaaggtcaaac |
115 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
19208764 |
attaaaggaagttattattaaacaaagtggtactaatggtcagtttacaattgtctccgacgggatttgaattttgtccctccaagttacaaggtcaaac |
19208863 |
T |
|
| Q |
116 |
ccttatcactgagttgatacctcgtatgcattctttgtatggcaataatatattcctttgaccctattaaatattatccatgtctcatgttcagttcatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19208864 |
ccttatcactgagttgatacctcgtatgcattctttgtatggcaataatatattccttcgaccctattaaatattatccatgtctcatgttcagttcatt |
19208963 |
T |
|
| Q |
216 |
caatagatttataccattgtcccttatgcatatatatttgaatagtaggctagtaacattat |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19208964 |
caatagatttataccattgtcccttatgcatatatatttgaatagtaggctagtaacattat |
19209025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 16684454 - 16684514
Alignment:
| Q |
77 |
gggatttgaatttcgtccctcccagttacaaggtcaaacccttatcactgagttgatacct |
137 |
Q |
| |
|
|||||||||| ||||||||| ||||||||| |||||| ||||||| | ||||||||||| |
|
|
| T |
16684454 |
gggatttgaacttcgtcccttagagttacaagctcaaactcttatcattaagttgatacct |
16684514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University