View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18554_low_9 (Length: 268)
Name: NF18554_low_9
Description: NF18554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18554_low_9 |
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| [»] scaffold0321 (1 HSPs) |
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Alignment Details
Target: scaffold0321 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 15395 - 15146
Alignment:
| Q |
1 |
atcagatatagtataagaagtgtctatcaaaagacaaatgaagatatatcaaataaaatggcatgcaattcacagaaatatttacttacagcaattcaag |
100 |
Q |
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| T |
15395 |
atcagatatagtataagaagtgtctatcaaaagataagtgaagatatatcaaataaaatggcatgcaattcacagaaatatttactcacagcaattcaag |
15296 |
T |
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| Q |
101 |
caaaaaatacagtgcttaccttgccgatatagtgaacattaattccatgagcagctagtgcttctgttgatgtctggccatccataggtgaaacttcgag |
200 |
Q |
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| T |
15295 |
caaaaaatacagtgcttaccttgccgatatagcgaacattaattccatgagcagctagtgcttctgttgatgtctggccatccataggtgaaacttctag |
15196 |
T |
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| Q |
201 |
ggtgcataggtcttgtacaaacttcggaagtgcaacatcggtaagatatt |
250 |
Q |
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| T |
15195 |
ggtgcataggtcttgtacaaacttcggaagtgcaacatcggtaagatatt |
15146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 82 - 250
Target Start/End: Complemental strand, 8666227 - 8666059
Alignment:
| Q |
82 |
ttacttacagcaattcaagcaaaaaatacagtgcttaccttgccgatatagtgaacattaattccatgagcagctagtgcttctgttgatgtctggccat |
181 |
Q |
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| T |
8666227 |
ttacttacagcaattaaactaaaaaatacaatgcttaccttgccaatatagcgaacattaattccatgagcatggagtgcttctgttaatgtctggccat |
8666128 |
T |
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| Q |
182 |
ccataggtgaaacttcgagggtgcataggtcttgtacaaacttcggaagtgcaacatcggtaagatatt |
250 |
Q |
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| T |
8666127 |
ccataggtgaaacttctagtgtgcataggtcttgtacaaacttcggcagtacaacatcagtaagatatt |
8666059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 8666317 - 8666252
Alignment:
| Q |
8 |
atagtataagaagtgtctatcaaaagacaaatgaagatatatcaaataaaatggcatgcaattcac |
73 |
Q |
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|||||| || || ||||||||||||||||| ||||||||||||||||||||||| || |||||| |
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| T |
8666317 |
atagtacaataaatgtctatcaaaagacaaggaaagatatatcaaataaaatggcacgcgattcac |
8666252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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