View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18555_high_10 (Length: 286)
Name: NF18555_high_10
Description: NF18555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18555_high_10 |
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| [»] scaffold0891 (1 HSPs) |
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| [»] scaffold0654 (1 HSPs) |
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| [»] scaffold1335 (1 HSPs) |
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Alignment Details
Target: scaffold0891 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 4027 - 3753
Alignment:
| Q |
1 |
tctccttccatcatttccatcacaagttctcttagctctttcctctgataatctagagtttggttgtgagataagtatagttttaccaacaattgttcca |
100 |
Q |
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| T |
4027 |
tctccttccatcatttccatcacaagttctcttagctctttcctctgataatctagagtttggttgtgagataagtatagttttaccaacaattgttcca |
3928 |
T |
|
| Q |
101 |
tccaagaattgaattctgattctcccaaacgatttgtcatttggtgaagcttattaactatttgagttcaactgtttggttaaagtagacaggtaataga |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
3927 |
tccaagaattgaattctggttctcccaaacgatttgtcatttggtgaagcttattaactatttgagttcaactgtttggtcaaagtagataggtaataga |
3828 |
T |
|
| Q |
201 |
atataagtattacaactaaaccaaaatataattcatattagactaatatttggaactcaaatagcattttgatga |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3827 |
atataagtattacaactaaaccaaaatataattcatattagactaatatttggaactcaaatagcattttgatga |
3753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 40930746 - 40930673
Alignment:
| Q |
69 |
agataagtatagttttaccaacaattgttccatccaagaattgaattctgattctcccaaacgatttgtcattt |
142 |
Q |
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| T |
40930746 |
agataagtatagtttgacaaataattgtttcatccaagaatcaaattcggattctctcaaacgattcgtcattt |
40930673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 38360918 - 38360850
Alignment:
| Q |
48 |
ataatctagagtttggttgtgagataagtatagttttaccaacaattgttccatccaagaattgaattc |
116 |
Q |
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| T |
38360918 |
ataatctagagtttgattgtgaggtaagtatagttggtccaagaattattccatctaagaattgaattc |
38360850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 35865905 - 35865944
Alignment:
| Q |
1 |
tctccttccatcatttccatcacaagttctcttagctctt |
40 |
Q |
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| T |
35865905 |
tctccttccatcatttccatcacaagttctcttatctctt |
35865944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 40950878 - 40950954
Alignment:
| Q |
69 |
agataagtatagttttaccaacaattgttccatccaagaattgaattctga-ttctcccaaacgatttgtcatttggt |
145 |
Q |
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|||||| |||||| | ||||||||||||| ||||||| ||||||||| ||| |||| |||||||||||||||||||| |
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| T |
40950878 |
agataaatatagtctgaccaacaattgtttcatccaaaaattgaatt-tgagttctttcaaacgatttgtcatttggt |
40950954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 35220689 - 35220729
Alignment:
| Q |
118 |
gattctcccaaacgatttgtcatttggtgaagcttattaac |
158 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||| |
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| T |
35220689 |
gattatcccaaacgattcgtcatttggtgaagcttattaac |
35220729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 35848234 - 35848262
Alignment:
| Q |
1 |
tctccttccatcatttccatcacaagttc |
29 |
Q |
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| T |
35848234 |
tctccttccatcatttccatcacaagttc |
35848262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 184
Target Start/End: Original strand, 39818662 - 39818701
Alignment:
| Q |
145 |
tgaagcttattaactatttgagttcaactgtttggttaaa |
184 |
Q |
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||||||||||||||||||||||||||| || ||||||||| |
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| T |
39818662 |
tgaagcttattaactatttgagttcaattgcttggttaaa |
39818701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0654
Description:
Target: scaffold0654; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 158
Target Start/End: Original strand, 3618 - 3656
Alignment:
| Q |
120 |
ttctcccaaacgatttgtcatttggtgaagcttattaac |
158 |
Q |
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|||||||||||||||||||||||||| ||||| |||||| |
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| T |
3618 |
ttctcccaaacgatttgtcatttggtaaagctcattaac |
3656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 29453266 - 29453220
Alignment:
| Q |
136 |
gtcatttggtgaagcttattaactatttgagttcaactgtttggtta |
182 |
Q |
| |
|
|||||||||||||| | |||||||||||||| |||| |||||||||| |
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| T |
29453266 |
gtcatttggtgaagttcattaactatttgagctcaattgtttggtta |
29453220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 118833 - 118773
Alignment:
| Q |
107 |
aattgaattctgattctcccaaacgatttgtcatttggtgaagcttattaactatttgagt |
167 |
Q |
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|||||||||| |||||||||||||||| ||| ||||||| |||| ||||| |||||||| |
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| T |
118833 |
aattgaattcagattctcccaaacgatatgttctttggtggagctcgttaaccatttgagt |
118773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 29 - 1
Alignment:
| Q |
1 |
tctccttccatcatttccatcacaagttc |
29 |
Q |
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| T |
29 |
tctccttccatcatttccatcacaagttc |
1 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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