View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18555_high_2 (Length: 434)
Name: NF18555_high_2
Description: NF18555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18555_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Complemental strand, 30275936 - 30275541
Alignment:
| Q |
18 |
ataaaccactttaagaaagtgattcctatattctcaataagtgattcttggattttagagaaataccttgtgtctggagtgtttggcggagctgggtctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275936 |
ataaaccactttaagaaagtgattcctatattctcaataagtgattcttggattttagagaaataccttgtgtctggagtgtttggcggagctgggtctt |
30275837 |
T |
|
| Q |
118 |
caaccgaacaacctgattattgtctgctaacttctagtggccggaaggttctgacactattacaggtgtgttcataattaccatacattattaaacatta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30275836 |
caaccgaacaacctgattattgtctgctaacttctagtggccggaaggttctgacactattacaggtgtgttca--attaccatacattattaaacatta |
30275739 |
T |
|
| Q |
218 |
ctgatgtgttttgattttctgtttagctttataaaagaagcatttaacagttgatacaccacatttatgttggtctaatctctaatgtgatactataatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30275738 |
ctgatgtgttttgattttctgtttagctttataaaagaagcatttaacagttgatacaccacatttatgttggtctaatctctattgtgatactataatt |
30275639 |
T |
|
| Q |
318 |
taatgttgaacgtcgtttctacttaataactaaacacagcagattgtaaattgtaacgaacataaattatttttaagaacttatcctcttgagttgca |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30275638 |
taatgttgaacgtcgtttctacttaataactaaacacagcagattgtaaattgtaacgaacataaattatttttaagaacttatcctcttgcgttgca |
30275541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 415
Target Start/End: Complemental strand, 7779247 - 7778852
Alignment:
| Q |
18 |
ataaaccactttaagaaagtgattcctatattctcaataagtgattcttggattttagagaaataccttgtgtctggagtgtttggcggagctgggtctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7779247 |
ataaaccactttaagaaagtgattcctatattctcagtaagtgattcttggattttagagaaataccttgtgtctggagtgtttggcggagctggatctt |
7779148 |
T |
|
| Q |
118 |
caaccgaacaacctgattattgtctgctaacttctagtggccggaaggttctgacactattacaggtgtgttcataattaccatacattattaaacatta |
217 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
7779147 |
caaaagaacaacctgattattgtctgctaacttctagtggccagaacgttctgacactattacaggtgtgttca--attaccatatattattaaacatta |
7779050 |
T |
|
| Q |
218 |
ctgatgtgttttgattttctgtttagctttataaaagaagcatttaacagttgatacaccacatttatgttggtctaatctctaatgtgatactataatt |
317 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| | |
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| T |
7779049 |
ctgatgtgttttgattttctgtttagctttatcaaagaagcatttaacagttgatacaccgcatttatgtcggtctaatctctaatctgatactataact |
7778950 |
T |
|
| Q |
318 |
taatgttgaacgtcgtttctacttaataactaaacacagcagattgtaaattgtaacgaacataaattatttttaagaacttatcctcttgagttgca |
415 |
Q |
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||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||| |||||| |||||| |
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| T |
7778949 |
taatgttgaacgttgtttctacttaacaactaaacacaacagattgtaaattgtaactaacataaattatttttaagaccttatactcttgcgttgca |
7778852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 28843245 - 28843301
Alignment:
| Q |
220 |
gatgtgttttgattttctgtttagctttataaaagaagcatttaacagttgatacac |
276 |
Q |
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|||||||||| || || ||||||| ||||||||||| | | |||||||||||||||| |
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| T |
28843245 |
gatgtgttttaatattatgtttagatttataaaagaggtacttaacagttgatacac |
28843301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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