View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18555_high_7 (Length: 358)
Name: NF18555_high_7
Description: NF18555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18555_high_7 |
 | |
|
| [»] scaffold0891 (1 HSPs) |
| | |
|
| [»] scaffold1335 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0891 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 346
Target Start/End: Complemental strand, 4418 - 4092
Alignment:
| Q |
20 |
gttggaagataattttagaaatatatgtttccaagattttcaagacatatgtacatttgatcattatgataactatttatttctatcaatcgtataatga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4418 |
gttggaagataattttagaaatatatgtttccaagattttcaagacatatgtacatttgatcattatgataactatttatttctatcaatcgtataatga |
4319 |
T |
|
| Q |
120 |
ttaattaagtgttttttccccataaaatattgcatatagtcaatcataagaacttacaataataaaaccataaatatgaagtggaaatagtttagctaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4318 |
ttaattaagtgttttttccccataaaatattgcatatagtcaatcataagaacttaaaataataaaaccataaatatgaagtggaaatagtttagctaaa |
4219 |
T |
|
| Q |
220 |
agtaatagaacagaaatgttgcatctcaacaaaatacatagaccatactaaacttgtatttggaattcaaatagctttattatcaataacctctttgata |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4218 |
agtaatagaacagaaatgttgcatctcaacaaaatacatagaccatactaaacttgtatttggaattcaaatagctttattatcaataacctctttgata |
4119 |
T |
|
| Q |
320 |
aacttctggaaattattgtatgatgat |
346 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
4118 |
aacttctggaaattattgtatgatgat |
4092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 138 - 346
Target Start/End: Original strand, 35774168 - 35774380
Alignment:
| Q |
138 |
cccataaaatattgcatatagtcaatcataagaacttacaataataaaaccataaatatgaagtggaaatagtttagctaaaagtaatagaacagaaatg |
237 |
Q |
| |
|
|||| |||||||||| |||||| ||| |||||||| ||| |||||| ||| || | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35774168 |
cccagaaaatattgcttatagttaatattaagaactaacattaataagacctta----ttaagtggaaatagtttagctaaaagtaatagaacagaaatg |
35774263 |
T |
|
| Q |
238 |
ttg------catctcaacaaaatacatagaccata--ctaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctgga |
329 |
Q |
| |
|
| | ||||||||||||||| |||||||||| ||| |||||||||||| | |||||||||||||| || || |||||||||||| |||||||||| |
|
|
| T |
35774264 |
tcgatgtcgcatctcaacaaaatatatagaccatatactagacttgtatttgggactcaaatagctttatgatgaagaacctctttgattaacttctgga |
35774363 |
T |
|
| Q |
330 |
aattattgtatgatgat |
346 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
35774364 |
aattattgtatgatgat |
35774380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 346
Target Start/End: Original strand, 35848122 - 35848161
Alignment:
| Q |
307 |
aacctctttgataaacttctggaaattattgtatgatgat |
346 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
35848122 |
aacctctttgattaacttatggaaattattgtatgatgat |
35848161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 346
Target Start/End: Complemental strand, 141 - 102
Alignment:
| Q |
307 |
aacctctttgataaacttctggaaattattgtatgatgat |
346 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
141 |
aacctctttgattaacttatggaaattattgtatgatgat |
102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University