View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18555_high_8 (Length: 343)
Name: NF18555_high_8
Description: NF18555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18555_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 109 - 282
Target Start/End: Original strand, 19268071 - 19268252
Alignment:
| Q |
109 |
tcctaggcagccactgtgaatgtt--gagagccaatccttaaatgatatc--gtcacagacgagacgacattaataaaagatagcaaaaaattaaagtta |
204 |
Q |
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| T |
19268071 |
tcctaggcagccactgcaaatgttttgagaaccaatccttaaatgatatctcgtcacagacgagacgacattaataaaagatagcacaaaattaaagtta |
19268170 |
T |
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| Q |
205 |
acagttgaacatcaaaatcatca----taagcagtagaattcaaaccccataaagcaattaaagcttatcttcaagcaattt |
282 |
Q |
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| T |
19268171 |
acagttgaacatcaaaaccatcataattaagcagtagaattcaaaccctataaagcaatcaaagcttattttcaagcaattt |
19268252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 337
Target Start/End: Original strand, 19268279 - 19268307
Alignment:
| Q |
309 |
ggaccaacatgatcaaggagaataatcta |
337 |
Q |
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| T |
19268279 |
ggaccaacatgatcaaggagaataatcta |
19268307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 1588959 - 1588841
Alignment:
| Q |
88 |
aaggttggcaaaggccaatactcctaggcagccactgtgaatgtt--gagagccaatccttaaatgatatcgtcacagacgagacgacattaataaaaga |
185 |
Q |
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||||||||||||||| || |||||| ||||||||||| ||||||| |||| |||||||||||||||||||||||| ||||| ||||||||||||||| | |
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| T |
1588959 |
aaggttggcaaaggctaaaactcctcggcagccactgcgaatgttttgagaaccaatccttaaatgatatcgtcactgacgaaacgacattaataaaa-a |
1588861 |
T |
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| Q |
186 |
tagcaaaaaattaaagttaa |
205 |
Q |
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| T |
1588860 |
tagcaaaaaattaaagttaa |
1588841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 1588468 - 1588389
Alignment:
| Q |
203 |
taacagttgaacatcaaaatcatcataagcagtagaattcaaaccccataaagcaattaaagcttatcttcaagcaattt |
282 |
Q |
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| T |
1588468 |
taacagttgaaaatcaaaatcatcataagcagtagaattcagaccccataaagcaattaaagcttatcttcaagcaattt |
1588389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 1590592 - 1590652
Alignment:
| Q |
28 |
tcggttcctaatttaagaaattaccatc--aattatatcccaccacaacagcattttctct |
86 |
Q |
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| T |
1590592 |
tcggttcctaatttaagaaattaccatcaaaattatatcccaccaaaacagcattttctct |
1590652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 337
Target Start/End: Complemental strand, 1588362 - 1588334
Alignment:
| Q |
309 |
ggaccaacatgatcaaggagaataatcta |
337 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
1588362 |
ggaccaacatgatcaaggagaataatcta |
1588334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 8152933 - 8152870
Alignment:
| Q |
206 |
cagttgaacatcaaaatcatcataagcagtagaattcaaaccccataaagcaattaaagcttat |
269 |
Q |
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| T |
8152933 |
cagttgaacatcaaaatcatcataagcagtataattaaacctccataaagtaatcaaagcttat |
8152870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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