View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18555_high_9 (Length: 323)

Name: NF18555_high_9
Description: NF18555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18555_high_9
NF18555_high_9
[»] chr3 (1 HSPs)
chr3 (16-309)||(34414247-34414540)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 16 - 309
Target Start/End: Complemental strand, 34414540 - 34414247
Alignment:
Q  16 atagaggaagaagcataccattaggattgctttgatgttatcatttgtgagtggaaaatcatactttgcaccatcttgaacttgaagtagtatctccaca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34414540 atagaggaagaagcataccattaggattgctttgatgttatcatttgtgagtggaaaatcatactttgcaccatcttgaacttgaagtagtatctccaca 34414441  T
Q  116 aagtcctttttgtctgattggccatcttcactcttcttcattctcttgtgatctgcaatcacctgatcaaagaaagaatctaatgcacagaaagtggcct 215  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34414440 aagtccttcttgtctgattggccatcttcactcttcttcattctcttgtgatctgcaatcacctgatcaaagaaagaatctaatgcacagaaagtggcct 34414341  T
Q  216 taaattcagatatttggcctgtaagaatgtcaatccaacccaatgaaggaaagaaatctccaacactgaaagctgctaattgtttcatcatctt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34414340 taaattcagatatttggcctgtaagaatgtcaatccaacccaatgaaggaaagaaatctccaacactgaaagctgctaattgtttcatcatctt 34414247  T

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