View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18555_low_1 (Length: 499)
Name: NF18555_low_1
Description: NF18555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18555_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Complemental strand, 30276000 - 30275541
Alignment:
| Q |
19 |
aatgctgctgccatacttggtaaatcaactctttccttgcattgaagaggttttgaatacacacataaaccactttaagaaagtgattcctatattctca |
118 |
Q |
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| T |
30276000 |
aatgctgctgccatacttggtaaatcaactctttccttgcattgaagaggttttgaatacacacataaaccactttaagaaagtgattcctatattctca |
30275901 |
T |
|
| Q |
119 |
ataagtgattcttggattttagagaaataccttgtgtctggagtgtttggcggagctgggtcttcaaccgaacaacctgattattgtctgctaacttcta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275900 |
ataagtgattcttggattttagagaaataccttgtgtctggagtgtttggcggagctgggtcttcaaccgaacaacctgattattgtctgctaacttcta |
30275801 |
T |
|
| Q |
219 |
gtggccggaaggttctgacactattacaggtgtgttcataattaccatacattattaaacattactgatgtgttttgattttctgtttagctttataaaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275800 |
gtggccggaaggttctgacactattacaggtgtgttc--aattaccatacattattaaacattactgatgtgttttgattttctgtttagctttataaaa |
30275703 |
T |
|
| Q |
319 |
gaagcatttaacagttgatacaccacatttatgttggtctaatctctaatgtgatactataatttaatgttgaacgtcgtttctacttaataactaaaca |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275702 |
gaagcatttaacagttgatacaccacatttatgttggtctaatctctattgtgatactataatttaatgttgaacgtcgtttctacttaataactaaaca |
30275603 |
T |
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| Q |
419 |
cagcagattgtaaattgtaacgaacataaattatttttaagaacttatcctcttgagttgca |
480 |
Q |
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| T |
30275602 |
cagcagattgtaaattgtaacgaacataaattatttttaagaacttatcctcttgcgttgca |
30275541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Complemental strand, 7779310 - 7778852
Alignment:
| Q |
19 |
aatgctgctgccatacttggtaaatcaactctttccttgcattgaagaggttttgaatacacacataaaccactttaagaaagtgattcctatattctca |
118 |
Q |
| |
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||||||||| |||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7779310 |
aatgctgctaccatacttggtaaagcatctctttccttgcattgaagag-ttttgaatacacacataaaccactttaagaaagtgattcctatattctca |
7779212 |
T |
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| Q |
119 |
ataagtgattcttggattttagagaaataccttgtgtctggagtgtttggcggagctgggtcttcaaccgaacaacctgattattgtctgctaacttcta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
7779211 |
gtaagtgattcttggattttagagaaataccttgtgtctggagtgtttggcggagctggatcttcaaaagaacaacctgattattgtctgctaacttcta |
7779112 |
T |
|
| Q |
219 |
gtggccggaaggttctgacactattacaggtgtgttcataattaccatacattattaaacattactgatgtgttttgattttctgtttagctttataaaa |
318 |
Q |
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|||||| ||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7779111 |
gtggccagaacgttctgacactattacaggtgtgttca--attaccatatattattaaacattactgatgtgttttgattttctgtttagctttatcaaa |
7779014 |
T |
|
| Q |
319 |
gaagcatttaacagttgatacaccacatttatgttggtctaatctctaatgtgatactataatttaatgttgaacgtcgtttctacttaataactaaaca |
418 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| ||||||||| |
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| T |
7779013 |
gaagcatttaacagttgatacaccgcatttatgtcggtctaatctctaatctgatactataacttaatgttgaacgttgtttctacttaacaactaaaca |
7778914 |
T |
|
| Q |
419 |
cagcagattgtaaattgtaacgaacataaattatttttaagaacttatcctcttgagttgca |
480 |
Q |
| |
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|| |||||||||||||||||| |||||||||||||||||||| ||||| |||||| |||||| |
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| T |
7778913 |
caacagattgtaaattgtaactaacataaattatttttaagaccttatactcttgcgttgca |
7778852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 341
Target Start/End: Original strand, 28843245 - 28843301
Alignment:
| Q |
285 |
gatgtgttttgattttctgtttagctttataaaagaagcatttaacagttgatacac |
341 |
Q |
| |
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|||||||||| || || ||||||| ||||||||||| | | |||||||||||||||| |
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| T |
28843245 |
gatgtgttttaatattatgtttagatttataaaagaggtacttaacagttgatacac |
28843301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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