View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18555_low_2 (Length: 489)
Name: NF18555_low_2
Description: NF18555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18555_low_2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 15 - 489
Target Start/End: Original strand, 39675989 - 39676469
Alignment:
| Q |
15 |
aatatccaagtaacatgaaaaatagtcctaagaaaatctaagagactctgaaattatagacagatcctacgaaagaaaataagataatctaacacaaaat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39675989 |
aatatccaagtaacatgaaaaatagtcctaagaaaatctaagagactctgaaattatagacagatcctacaaaagaaaataagataatctaacacaaaat |
39676088 |
T |
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| Q |
115 |
tttgtaagatattgtatagtaagtttaagcttgttacaaatatacccttgaaaagagaaaacataacaatcgatgcaacggcttgaggtacaagattcat |
214 |
Q |
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| T |
39676089 |
tttgtaagatattgtatagtaagtttaagcttgttaca--tatacccttgaaaagagaaaacataacaatcgatgcaacgacttgaggtacaagattcat |
39676186 |
T |
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| Q |
215 |
agaaatcttcaacatttggtcttcttctagtgtcaccgcgacattcactccaaagaatcaagcaccacaatttcggaacaaacaaatggcaaaatagaca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39676187 |
agaaatcttcaacatttggtcttcttctagtgtcaccgtgacattcactccaaagaatcaagcaccacaatttcggaacaaacaaatggcaaaatagaca |
39676286 |
T |
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| Q |
315 |
aaagtttaacca-ttaagtagaagcaac-------ttcccaaaccttacccacttaataaaagcaaacacgcttaaccgccgcataagaccgaagctacc |
406 |
Q |
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| T |
39676287 |
aaagtttaaccatttaagtagaagcaacttcccagttcccaaagcttaaccacttaatgaaagcaaacacgcttaaccgccgcataagaccgaagctacc |
39676386 |
T |
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| Q |
407 |
aaagtttacttatcaaaagaaggtaaaagatgggccttaaccctaaagatagaagcaaaaatatcaaatctaaacaataagaa |
489 |
Q |
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| T |
39676387 |
aaagtttacttatcaaaagaaggtaaaagatgggccttaaccctaaagatagaagcaaaaatatcaaatctaaacaataagaa |
39676469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 30979892 - 30979847
Alignment:
| Q |
138 |
tttaagcttgttacaaatatacccttgaaaagagaaaacataacaa |
183 |
Q |
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| T |
30979892 |
tttaaactttttacaaatatacccttcaaaagagaaaatataacaa |
30979847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 23051 - 23013
Alignment:
| Q |
138 |
tttaagcttgttacaaatatacccttgaaaagagaaaac |
176 |
Q |
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| T |
23051 |
tttaaacttgttacaaatataccctttaaaagagaaaac |
23013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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