View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18555_low_4 (Length: 419)
Name: NF18555_low_4
Description: NF18555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18555_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 22 - 389
Target Start/End: Original strand, 24632578 - 24632945
Alignment:
| Q |
22 |
agaaaatacgaaagttaaaaggtttgtgcgatccaatctcggaaaggctttggaaaagaaaagccaggattttgctgctgtagttgcagcacaaactgcn |
121 |
Q |
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| T |
24632578 |
agaaaatacgaaagttaaaaggtttgtgcgattcaatctcggagaggctttggaaaagaaaagccaggattttgctgctgtagttgcagcacaaactgca |
24632677 |
T |
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| Q |
122 |
nnnnnnn-cagtaacgactccagtgaaagaggagcttgctgctgctgcagaatccaaggagactgaaccaaagtaagtagttctatgaattcctagttgt |
220 |
Q |
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| T |
24632678 |
ataaaaaacggtaacgactccagtgaaagaggagcttgctgctgctgcagaatccaaggagactgaaccaaagtaggtagttctatgaattcctagttgt |
24632777 |
T |
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| Q |
221 |
tagtgagttatttaattacgaaattttggtaattagttcctggaaaactacattctaaaaggaaaaactacagcaggggtccttgatcttaatttcgcgt |
320 |
Q |
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| T |
24632778 |
tagtgagttatttaattacgaaattttggtaattagttcctggaaaactacattctaaaaggaaaaactacagca-gggtccttgatcttaatttcgcgt |
24632876 |
T |
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| Q |
321 |
caatttaaagtttcaaacagctcgttgatcttgatttcgtgtcaatttagtcatttcttcatgtcatgt |
389 |
Q |
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| T |
24632877 |
caatttaaagtttcaaacaggtccttgatcttgatttcgtgtcaatttagtcatttcttcatgtcatgt |
24632945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 22 - 246
Target Start/End: Complemental strand, 33415628 - 33415405
Alignment:
| Q |
22 |
agaaaatacgaaagttaaaaggtttgtgcgatccaatctcggaaaggctttggaaaagaaaagccaggattttgctgctgtagttgcagcacaaactgcn |
121 |
Q |
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| T |
33415628 |
agaaaatatgaaagttacaaggtttgtgcgtttcaacctcggagaaggtttggaaaagaaaagccaggattttgctgctgaagtcgccgcacaaacttca |
33415529 |
T |
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| Q |
122 |
nnnnnnncagtaacgactccagtgaaagaggagcttgctgctgctgcagaatccaaggagactgaaccaaagtaa--gtagttctatgaattcctagttg |
219 |
Q |
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| T |
33415528 |
gcaaaagcggtaactactccagtgacagaggagc---ctgctgccgcagaagccaaggagactgaaccaaagtaagtgtagttcaatgaatttctacttg |
33415432 |
T |
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| Q |
220 |
ttagtgagttatttaattacgaaattt |
246 |
Q |
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| T |
33415431 |
ttattgagttatttaattatgaaattt |
33415405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 200 - 386
Target Start/End: Complemental strand, 33385120 - 33384945
Alignment:
| Q |
200 |
gttctatgaattcctagttgttagtgagttatttaattacgaaattttggtaattagttcctggaaaactacattctaaaaggaaaaactacagcagggg |
299 |
Q |
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| T |
33385120 |
gttctatgaattcctacttgttattgagttatttaattatgaaattttggtaattagttcctggaaaactacattctaaaagaacaaactacaacagggg |
33385021 |
T |
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| Q |
300 |
tccttgatcttaatttcgcgtcaatttaaagtttcaaacagctcgttgatcttgatttcgtgtcaatttagtcatttcttcatgtca |
386 |
Q |
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| T |
33385020 |
tcctttaactt-----------aatttaaaggttcaaacaagtccttgatattgttttcgtgttaatttagtcatttcttcatgtca |
33384945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 383
Target Start/End: Complemental strand, 9164765 - 9164707
Alignment:
| Q |
325 |
ttaaagtttcaaacagctcgttgatcttgatttcgtgtcaatttagtcatttcttcatg |
383 |
Q |
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| T |
9164765 |
ttaaagtttcaaacaggtccttgatcttgttttagtgtcaatttagtcatttcttcatg |
9164707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 33270413 - 33270336
Alignment:
| Q |
22 |
agaaaatacgaaagttaaaaggtttgtgcgatccaatctcggaaaggctttggaaaagaaaagccaggattttgctgc |
99 |
Q |
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| T |
33270413 |
agaaaatatgaaagttacaaggtttgtgcagttcaacctcggagaaggtttggaaaagaaaagccaggattttgctgc |
33270336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 33270185 - 33270122
Alignment:
| Q |
322 |
aatttaaagtttcaaacagctcgttgatcttgatttcgtgtcaatttagtcatttcttcatgtca |
386 |
Q |
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| T |
33270185 |
aatttaatgtttcaaacagatccttgatcttt-tttcgtgtcaatttagtcatttcttcatgtca |
33270122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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