View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18555_low_5 (Length: 415)
Name: NF18555_low_5
Description: NF18555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18555_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 26321018 - 26321257
Alignment:
| Q |
18 |
aaaatatcctacaaaagaattgttcgtttttggagactcgtatgttgataccggcaacacccaaaaaagtaaacctggttcatggaaagaaccttatggc |
117 |
Q |
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| T |
26321018 |
aaaatatccaacaaaagaattgttcgttttcggagactcgtatgttgataccggcaacagccaaaaaagtaaacctggttcatggaaagaaccttatggc |
26321117 |
T |
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| Q |
118 |
ataacctttcccggaaaacctgcgggaagattctcagacggtagagttttaactgacttcattggtacgtaacctatttcacccatctctctctaatgct |
217 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26321118 |
ataacctttcccggaaaacctgcaggaagattctcggacggtagagttttaactgacttcattggtacgtaacctatttcacccatctctctctaatgct |
26321217 |
T |
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| Q |
218 |
attatcataataatcaaatgaaacattgcaaagtacatgc |
257 |
Q |
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| T |
26321218 |
attatcataataatcaaatgaaacattgcaaagtacatgc |
26321257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 280 - 402
Target Start/End: Original strand, 26321254 - 26321376
Alignment:
| Q |
280 |
atgctttttaattaaattattttgtttatatacttttctagctttcacatgaaaaattatgcgtttcgaattaattcagatgctttagctctattaccgt |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26321254 |
atgctttttaattaaattattttgtttatatacttttctagctttcacatgaaaaattatgcgtttcgaattaattcagatgctttagctctattaccgt |
26321353 |
T |
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| Q |
380 |
attatatttctctatttattata |
402 |
Q |
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| T |
26321354 |
attatatttctctatttattata |
26321376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 26327563 - 26327724
Alignment:
| Q |
23 |
atcctacaaaagaattgttcgtttttggagactcgtatgttgataccggcaacacccaaaaaagtaaacctggttcatggaaagaaccttatggcataac |
122 |
Q |
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||||| ||||| ||||||| ||||||||||| ||||||||||||||||||||| || ||||| | | || ||||||||||| ||||||||| ||||| |
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| T |
26327563 |
atccttcaaaaaaattgtttgtttttggagattcgtatgttgataccggcaactccataaaaaccatatttgattcatggaaagtaccttatggtataac |
26327662 |
T |
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| Q |
123 |
ctttcccggaaaacctgcgggaagattctcagacggtagagttttaactgacttcattggta |
184 |
Q |
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| T |
26327663 |
ctttcccggaaaaccagttgggagattctccgacggtagagttttaaccgacttccttggta |
26327724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 26335515 - 26335676
Alignment:
| Q |
23 |
atcctacaaaagaattgttcgtttttggagactcgtatgttgataccggcaacacccaaaaaagtaaacctggttcatggaaagaaccttatggcataac |
122 |
Q |
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||||| ||||| ||||||| ||||| |||||||||||||||||||||||||||||| |||| || | | |||||||||| || || ||||||||||| |
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| T |
26335515 |
atccttcaaaaaaattgtttgttttcggagactcgtatgttgataccggcaacaccataaaacctatatccggttcatggagagccccatatggcataac |
26335614 |
T |
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| Q |
123 |
ctttcccggaaaacctgcgggaagattctcagacggtagagttttaactgacttcattggta |
184 |
Q |
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||||||| |||| || | ||||||||||| ||||| | |||||||||||||||| |||||| |
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| T |
26335615 |
ctttccccgaaagccgtccggaagattctccgacggcatagttttaactgacttccttggta |
26335676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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