View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18555_low_8 (Length: 360)
Name: NF18555_low_8
Description: NF18555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18555_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 8 - 333
Target Start/End: Original strand, 32912044 - 32912367
Alignment:
| Q |
8 |
agcacagacatggacacgaacatcagacacgacactgacacaaacacgtcaatacagataaaattttagttgcatatatatcatggctaataatatattg |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32912044 |
agcacatacatggacacgaacatcagacacgacactgacacaaacacgtcaatacagataaaattttagttgcatatatatcatggctaataatatattg |
32912143 |
T |
|
| Q |
108 |
tttctttcagttacttacactttggtagagaagcatctcgagctgagattatgaaggtcactcgtagttctcctaacacttgcattttagctggatttga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
32912144 |
tttctttcagttacttacactttggtagagaagcatctcgagctgagattatgaaggtcactcgtagttctcctaacccttgccttttagctggatttga |
32912243 |
T |
|
| Q |
208 |
tggtaaacacaattttgtttcacaagttattgaagtttcaaattgttagttatttgttaaaactgaaaaaatcttcgatcacactatttcgtctatatga |
307 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32912244 |
tggtaaacacaagtttgtttcacaagttattgaagtttcaaattgttagttatttgttaaagctgaaaaaatcttcgatcacactatttcgtc--tatga |
32912341 |
T |
|
| Q |
308 |
taatttcagataataatttgattgaa |
333 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
32912342 |
taatttcagataataatttgattgaa |
32912367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 115 - 254
Target Start/End: Original strand, 32924113 - 32924252
Alignment:
| Q |
115 |
cagttacttacactttggtagagaagcatctcgagctgagattatgaaggtcactcgtagttctcctaacacttgcattttagctggatttgatggtaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||||||| | || |||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
32924113 |
cagttacttacactttggtagagaagcatctcgagcagagattttgaaggtcacacataattctcccaacccttgcattttagctggatttgatggtaaa |
32924212 |
T |
|
| Q |
215 |
cacaattttgtttcacaagttattgaagtttcaaattgtt |
254 |
Q |
| |
|
||||| || ||||||||||||||||||||| || ||||| |
|
|
| T |
32924213 |
cacaagttattttcacaagttattgaagttttaagttgtt |
32924252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 32942763 - 32942873
Alignment:
| Q |
108 |
tttctttcagttacttacactttggtagagaagcatctcgagctgagattatgaaggtcactcgtagttctcctaacacttgcattttagctggatttga |
207 |
Q |
| |
|
||||||||||||| || | ||||| | |||||||||||| ||||| ||| |||| |||||| | |||||||||| |||||||||||||||| | | | |
|
|
| T |
32942763 |
tttctttcagttatttgcggtttggcaaagaagcatctcgtgctgaaattttgaaagtcactaatggttctcctaatccttgcattttagctggctatca |
32942862 |
T |
|
| Q |
208 |
tggtaaacaca |
218 |
Q |
| |
|
||||||||||| |
|
|
| T |
32942863 |
tggtaaacaca |
32942873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 32949944 - 32950054
Alignment:
| Q |
108 |
tttctttcagttacttacactttggtagagaagcatctcgagctgagattatgaaggtcactcgtagttctcctaacacttgcattttagctggatttga |
207 |
Q |
| |
|
||||||||||||| || | ||||| | |||||||||||| ||||| ||| |||| |||||| | |||||||||| |||||||||||||||| | | | |
|
|
| T |
32949944 |
tttctttcagttatttgcggtttggcaaagaagcatctcgtgctgaaattttgaaagtcactaatggttctcctaatccttgcattttagctggctatca |
32950043 |
T |
|
| Q |
208 |
tggtaaacaca |
218 |
Q |
| |
|
||||||||||| |
|
|
| T |
32950044 |
tggtaaacaca |
32950054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 108 - 219
Target Start/End: Original strand, 11824577 - 11824688
Alignment:
| Q |
108 |
tttctttcagttacttacactttggtagagaagcatctcgagctgagattatgaaggtcactcgtagttctcctaacacttgcattttagctggatttga |
207 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||| ||||||||| |||||||||||| || |||||||||| |||||||||||||||||||||| |
|
|
| T |
11824577 |
tttcttccagttacttacactttggtacagaagcatctcgggctgagattttgaaggtcactcataattctcctaacccttgcattttagctggatttga |
11824676 |
T |
|
| Q |
208 |
tggtaaacacaa |
219 |
Q |
| |
|
||||||| |||| |
|
|
| T |
11824677 |
tggtaaatacaa |
11824688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 32740717 - 32740757
Alignment:
| Q |
8 |
agcacagacatggacacgaacatcagacacgacactgacac |
48 |
Q |
| |
|
||||||||| | |||||||||||| |||||||||||||||| |
|
|
| T |
32740717 |
agcacagacttcgacacgaacatctgacacgacactgacac |
32740757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University