View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18556_high_14 (Length: 239)

Name: NF18556_high_14
Description: NF18556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18556_high_14
NF18556_high_14
[»] chr4 (45 HSPs)
chr4 (113-187)||(22920159-22920231)
chr4 (113-187)||(22971568-22971640)
chr4 (115-190)||(149172-149245)
chr4 (113-189)||(48743821-48743894)
chr4 (113-188)||(43358724-43358796)
chr4 (113-187)||(36812292-36812363)
chr4 (113-187)||(55596060-55596131)
chr4 (113-188)||(8719807-8719879)
chr4 (113-171)||(25539971-25540027)
chr4 (5-46)||(48743713-48743754)
chr4 (2-46)||(149314-149358)
chr4 (1-46)||(54251477-54251522)
chr4 (2-46)||(9472540-9472584)
chr4 (2-46)||(28203392-28203436)
chr4 (2-46)||(44170646-44170690)
chr4 (2-46)||(55595949-55595993)
chr4 (128-191)||(44571308-44571371)
chr4 (3-46)||(45548811-45548854)
chr4 (1-40)||(52379068-52379107)
chr4 (126-188)||(13267366-13267427)
chr4 (129-187)||(15515909-15515967)
chr4 (1-43)||(35332705-35332747)
chr4 (113-190)||(39880916-39880990)
chr4 (1-39)||(53091253-53091291)
chr4 (1-46)||(3968884-3968929)
chr4 (1-46)||(4489825-4489870)
chr4 (114-190)||(12241169-12241242)
chr4 (1-46)||(25139982-25140027)
chr4 (1-46)||(25725721-25725766)
chr4 (1-46)||(36812430-36812475)
chr4 (5-46)||(40308444-40308485)
chr4 (2-43)||(40755921-40755962)
chr4 (1-46)||(51389101-51389146)
chr4 (1-46)||(55996421-55996466)
chr4 (113-188)||(389545-389618)
chr4 (2-46)||(1562563-1562607)
chr4 (2-46)||(12074178-12074222)
chr4 (10-46)||(17805460-17805496)
chr4 (2-46)||(31147231-31147275)
chr4 (128-188)||(32079233-32079293)
chr4 (2-46)||(35824133-35824177)
chr4 (2-46)||(40721991-40722035)
chr4 (2-46)||(43358613-43358657)
chr4 (2-46)||(47998594-47998638)
chr4 (2-46)||(51318703-51318747)
[»] chr2 (45 HSPs)
chr2 (116-188)||(3585740-3585810)
chr2 (113-187)||(39744483-39744554)
chr2 (113-191)||(13465960-13466035)
chr2 (128-188)||(10466075-10466135)
chr2 (128-190)||(29192535-29192596)
chr2 (113-188)||(43356429-43356501)
chr2 (115-188)||(14797540-14797610)
chr2 (113-189)||(11741934-11742008)
chr2 (126-187)||(36909732-36909792)
chr2 (126-186)||(17826169-17826229)
chr2 (5-43)||(29192681-29192719)
chr2 (130-192)||(39737572-39737633)
chr2 (132-189)||(31847660-31847717)
chr2 (113-188)||(6746329-6746402)
chr2 (2-46)||(13466102-13466146)
chr2 (2-46)||(14797677-14797721)
chr2 (2-46)||(34442113-34442157)
chr2 (1-40)||(3771370-3771409)
chr2 (1-40)||(12784432-12784471)
chr2 (1-40)||(21738649-21738688)
chr2 (2-40)||(19916655-19916693)
chr2 (2-40)||(24766152-24766190)
chr2 (2-40)||(26290884-26290922)
chr2 (1-43)||(41715450-41715492)
chr2 (2-40)||(45420135-45420173)
chr2 (1-46)||(12600047-12600092)
chr2 (1-46)||(32688571-32688616)
chr2 (1-46)||(43356288-43356333)
chr2 (5-46)||(43665625-43665666)
chr2 (2-46)||(1052523-1052567)
chr2 (2-46)||(1889147-1889191)
chr2 (2-30)||(2308365-2308393)
chr2 (2-46)||(6365186-6365230)
chr2 (2-46)||(8352835-8352879)
chr2 (2-46)||(11980651-11980695)
chr2 (2-46)||(13553147-13553191)
chr2 (2-46)||(13711061-13711105)
chr2 (2-46)||(31635837-31635881)
chr2 (2-46)||(32749998-32750042)
chr2 (3-46)||(33030129-33030173)
chr2 (1-41)||(35705948-35705988)
chr2 (2-46)||(36587495-36587539)
chr2 (2-46)||(39247490-39247534)
chr2 (2-46)||(39737713-39737757)
chr2 (2-46)||(41353524-41353568)
[»] chr3 (29 HSPs)
chr3 (114-188)||(52678480-52678552)
chr3 (128-188)||(32008157-32008217)
chr3 (115-185)||(51650722-51650789)
chr3 (1-46)||(52678604-52678649)
chr3 (130-189)||(51487872-51487930)
chr3 (1-40)||(52100260-52100299)
chr3 (1-46)||(28300285-28300330)
chr3 (5-46)||(41369600-41369641)
chr3 (2-46)||(39604273-39604317)
chr3 (2-46)||(47849672-47849716)
chr3 (113-188)||(51032514-51032586)
chr3 (2-46)||(55466958-55467002)
chr3 (2-40)||(349446-349484)
chr3 (2-40)||(26550237-26550275)
chr3 (2-40)||(27168715-27168753)
chr3 (6-40)||(38910492-38910526)
chr3 (113-190)||(40159712-40159786)
chr3 (2-40)||(53681111-53681149)
chr3 (1-46)||(20893269-20893314)
chr3 (1-46)||(31176467-31176512)
chr3 (126-179)||(35756102-35756155)
chr3 (2-46)||(108431-108475)
chr3 (2-46)||(5398918-5398962)
chr3 (2-46)||(11335329-11335373)
chr3 (128-188)||(21579237-21579297)
chr3 (2-46)||(32008033-32008077)
chr3 (2-46)||(51032651-51032695)
chr3 (2-46)||(52727475-52727519)
chr3 (2-46)||(53133979-53134023)
[»] chr6 (18 HSPs)
chr6 (116-189)||(14095025-14095096)
chr6 (128-186)||(28883636-28883693)
chr6 (1-46)||(16743293-16743338)
chr6 (1-46)||(27102114-27102159)
chr6 (1-46)||(27143936-27143981)
chr6 (1-46)||(28883775-28883820)
chr6 (2-46)||(8778899-8778943)
chr6 (2-40)||(16368080-16368118)
chr6 (2-39)||(2822222-2822259)
chr6 (2-39)||(32253780-32253817)
chr6 (5-46)||(34490350-34490391)
chr6 (2-46)||(3821378-3821422)
chr6 (2-46)||(9188971-9189015)
chr6 (2-46)||(9954548-9954592)
chr6 (2-46)||(11785355-11785399)
chr6 (2-42)||(26391316-26391356)
chr6 (113-157)||(27102210-27102253)
chr6 (113-157)||(27144032-27144075)
[»] chr5 (26 HSPs)
chr5 (113-190)||(22647448-22647523)
chr5 (113-188)||(32873037-32873109)
chr5 (130-185)||(39032707-39032762)
chr5 (113-187)||(6046424-6046500)
chr5 (1-40)||(40829413-40829452)
chr5 (1-46)||(32873176-32873221)
chr5 (1-46)||(36416089-36416134)
chr5 (2-46)||(29402182-29402226)
chr5 (3-46)||(8087800-8087843)
chr5 (4-46)||(285229-285271)
chr5 (2-40)||(6940183-6940221)
chr5 (126-188)||(14914492-14914553)
chr5 (1-30)||(4719649-4719678)
chr5 (1-46)||(12718407-12718452)
chr5 (1-46)||(12779633-12779678)
chr5 (1-46)||(20125388-20125433)
chr5 (1-46)||(31708369-31708414)
chr5 (113-157)||(36415980-36416022)
chr5 (1-46)||(36581492-36581537)
chr5 (2-46)||(2050927-2050971)
chr5 (2-46)||(5996667-5996711)
chr5 (2-46)||(22647588-22647632)
chr5 (2-46)||(27340869-27340913)
chr5 (2-46)||(29807029-29807073)
chr5 (2-46)||(38500943-38500987)
chr5 (2-46)||(39191861-39191905)
[»] chr1 (38 HSPs)
chr1 (113-190)||(30196823-30196898)
chr1 (113-188)||(3605983-3606056)
chr1 (113-187)||(27810103-27810174)
chr1 (129-187)||(48871843-48871901)
chr1 (127-188)||(15182471-15182531)
chr1 (113-181)||(30505232-30505298)
chr1 (1-46)||(30505363-30505408)
chr1 (1-46)||(42615859-42615904)
chr1 (116-187)||(21441750-21441818)
chr1 (1-46)||(3606121-3606166)
chr1 (1-46)||(49621362-49621407)
chr1 (2-46)||(27810274-27810318)
chr1 (2-46)||(30439250-30439294)
chr1 (2-46)||(34157520-34157563)
chr1 (2-46)||(36690599-36690643)
chr1 (2-46)||(36706700-36706744)
chr1 (2-46)||(43755705-43755749)
chr1 (113-183)||(3826708-3826776)
chr1 (128-187)||(8905852-8905910)
chr1 (2-40)||(23554751-23554789)
chr1 (126-188)||(25130825-25130887)
chr1 (1-46)||(3919299-3919344)
chr1 (1-46)||(5315210-5315255)
chr1 (1-46)||(49699779-49699824)
chr1 (126-187)||(51193021-51193082)
chr1 (2-46)||(18541078-18541122)
chr1 (2-46)||(24910161-24910205)
chr1 (2-46)||(25989011-25989055)
chr1 (2-46)||(26501295-26501339)
chr1 (2-46)||(39669806-39669850)
chr1 (2-46)||(40605448-40605492)
chr1 (2-46)||(44112454-44112498)
chr1 (2-46)||(44641930-44641974)
chr1 (2-46)||(44672057-44672101)
chr1 (2-46)||(45042261-45042305)
chr1 (2-46)||(49596235-49596279)
chr1 (2-46)||(50062001-50062045)
chr1 (2-46)||(52233248-52233292)
[»] chr8 (44 HSPs)
chr8 (113-188)||(45081510-45081583)
chr8 (116-189)||(12960052-12960123)
chr8 (116-191)||(1158220-1158292)
chr8 (116-187)||(31824961-31825029)
chr8 (128-189)||(12659275-12659336)
chr8 (113-186)||(7376634-7376704)
chr8 (1-46)||(14548850-14548895)
chr8 (1-46)||(30943866-30943911)
chr8 (2-46)||(3650113-3650157)
chr8 (126-190)||(7129655-7129718)
chr8 (113-188)||(9431173-9431245)
chr8 (2-46)||(12659052-12659096)
chr8 (2-46)||(42716320-42716364)
chr8 (113-188)||(34299293-34299363)
chr8 (1-39)||(45081397-45081435)
chr8 (1-46)||(3775898-3775943)
chr8 (1-46)||(20473778-20473823)
chr8 (1-46)||(31806298-31806343)
chr8 (1-46)||(40608512-40608557)
chr8 (130-190)||(10344454-10344514)
chr8 (2-46)||(12959938-12959982)
chr8 (113-187)||(40608624-40608696)
chr8 (2-40)||(1158368-1158406)
chr8 (2-40)||(45405531-45405569)
chr8 (2-43)||(3950110-3950151)
chr8 (1-46)||(10553110-10553155)
chr8 (130-183)||(30943732-30943784)
chr8 (1-46)||(43873718-43873763)
chr8 (2-46)||(1332495-1332539)
chr8 (2-46)||(3988905-3988949)
chr8 (2-46)||(6849495-6849539)
chr8 (2-46)||(8841030-8841074)
chr8 (2-46)||(9431312-9431356)
chr8 (2-46)||(9738720-9738764)
chr8 (2-46)||(14029270-14029314)
chr8 (2-46)||(20852919-20852963)
chr8 (2-46)||(29910239-29910283)
chr8 (2-46)||(32725807-32725851)
chr8 (2-46)||(34996387-34996431)
chr8 (2-46)||(35818937-35818981)
chr8 (2-46)||(39021470-39021514)
chr8 (2-46)||(40102023-40102067)
chr8 (2-46)||(40842014-40842058)
chr8 (2-46)||(44711978-44712022)
[»] chr7 (31 HSPs)
chr7 (128-188)||(21037123-21037183)
chr7 (113-188)||(9055378-9055450)
chr7 (113-188)||(2756807-2756879)
chr7 (2-45)||(42467204-42467247)
chr7 (130-188)||(37149362-37149420)
chr7 (113-189)||(21153163-21153236)
chr7 (127-188)||(30769547-30769607)
chr7 (1-46)||(33212041-33212086)
chr7 (2-46)||(9055267-9055311)
chr7 (2-46)||(28081809-28081853)
chr7 (2-46)||(43025809-43025853)
chr7 (3-46)||(2756956-2756999)
chr7 (3-46)||(2790178-2790221)
chr7 (4-46)||(21153052-21153094)
chr7 (150-192)||(41815279-41815321)
chr7 (1-46)||(17500696-17500741)
chr7 (1-46)||(17552473-17552518)
chr7 (1-46)||(23329901-23329946)
chr7 (1-46)||(23844964-23845009)
chr7 (5-46)||(47644708-47644749)
chr7 (2-46)||(16567316-16567360)
chr7 (2-46)||(16598302-16598346)
chr7 (1-41)||(25200391-25200431)
chr7 (2-46)||(25940659-25940703)
chr7 (2-46)||(27075470-27075514)
chr7 (2-46)||(27202797-27202841)
chr7 (2-46)||(36920804-36920847)
chr7 (2-46)||(38023451-38023495)
chr7 (2-46)||(40212516-40212560)
chr7 (2-46)||(41966332-41966376)
chr7 (2-46)||(43079659-43079703)
[»] scaffold0238 (1 HSPs)
scaffold0238 (2-46)||(16387-16431)
[»] scaffold0087 (2 HSPs)
scaffold0087 (128-188)||(26950-27009)
scaffold0087 (2-46)||(27090-27134)
[»] scaffold0178 (1 HSPs)
scaffold0178 (1-40)||(9775-9814)
[»] scaffold0504 (1 HSPs)
scaffold0504 (2-46)||(10762-10806)
[»] scaffold0154 (2 HSPs)
scaffold0154 (2-46)||(4315-4359)
scaffold0154 (2-46)||(9875-9919)
[»] scaffold0018 (1 HSPs)
scaffold0018 (2-46)||(36002-36046)
[»] scaffold0014 (1 HSPs)
scaffold0014 (2-46)||(199266-199310)


Alignment Details
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 22920231 - 22920159
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactc 187  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22920231 gaccaatcaaaatagaga--aaaacaaagttgtcataaaagttgtttagaaaaagatgtacaaatatcactactc 22920159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 22971568 - 22971640
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactc 187  Q
    |||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22971568 gaccaatcaaaatagag--aaaaacaaagttgtcataaaagttgtttagaaaaagatgtacaaatatcactactc 22971640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 149245 - 149172
Alignment:
Q  115 ccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactctat 190  Q
    ||||||||||||||||  ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||    
T  149245 ccaatcaaaatagaga--aaaacaaagttgtcatggaagttgtttagaaagaggtgtacaaatatcactactctat 149172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 48743821 - 48743894
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactcta 189  Q
    |||||||||||||||||  |||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||    
T  48743821 gaccaatcaaaatagag--aaaaacaaagttgtcatggaagttgtttag-aaaagctgtacaaatatcactactcta 48743894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 43358724 - 43358796
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    ||||||||||||||||||  |||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||    
T  43358724 gaccaatcaaaatagaga--aaaacaaagttgtcataaaaattgttta-aaaaagatgtacaaatatcactactct 43358796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 36812363 - 36812292
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactc 187  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||    
T  36812363 gaccaatcaaaatagaga--aaaacaaagttgtcatggaagttgtttag-aaaaggtgtacaaatatcactactc 36812292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 55596060 - 55596131
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactc 187  Q
    ||||||||||||||||||  ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  55596060 gaccaatcaaaatagaga--aaaacgaagttgtcatgaaagttgtttag-aaaaggtgtacaaatatcactactc 55596131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 8719879 - 8719807
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    ||||||||||||||||||   |||||||||||||||  |||||||||| ||| ||||||| |||||||||||||||    
T  8719879 gaccaatcaaaatagaga---aaacaaagttgtcatagaagttgtttaaaaagagatgtataaatatcactactct 8719807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 25539971 - 25540027
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgt 171  Q
    |||||||||||||||| |  |||||||||||||||| ||||||||||||||||||||||    
T  25539971 gaccaatcaaaatagaaa--aaaacaaagttgtcataaaagttgtttagaaaaagatgt 25540027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 48743713 - 48743754
Alignment:
Q  5 aaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  48743713 aaatgatatttgtacaaccaatttttaacaattttttgacaa 48743754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 149358 - 149314
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||    
T  149358 gagaaatgatatttgtacaaccaatttctaacaattttttgacaa 149314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 54251522 - 54251477
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||| | ||||||||||||||| |||||    
T  54251522 tgagaaatgatatttgtacaactattttttaataatttttcgacaa 54251477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 9472584 - 9472540
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||| | ||| |||||||||||||||||    
T  9472584 gagaaatgatatttgtacaactattttctaataattttttgacaa 9472540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 28203392 - 28203436
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||| || ||| |||||||||||||||||    
T  28203392 gagaaatgatatttgtacaatcattttgtaataattttttgacaa 28203436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 44170690 - 44170646
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | |||||||||||||||    
T  44170690 gagaaatgatatttgtacaaccattttgttataattttttgacaa 44170646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 55595949 - 55595993
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||||||| ||| || ||||||||||    
T  55595949 gagaaatgatatttgtacaaccaatttctaacaactttttgacaa 55595993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 44571371 - 44571308
Alignment:
Q  128 agagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactctata 191  Q
    |||||||||||||||||| |   |||||||| | |||||  |||||||||||||||||||||||    
T  44571371 agagaaaaacaaagttgttaaagaagttgttcataaaaaattgtacaaatatcactactctata 44571308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 45548854 - 45548811
Alignment:
Q  3 agaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||| ||| | |||||||||||||||    
T  45548854 agaaatgatatttgtacaaccattttgtgataattttttgacaa 45548811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 52379107 - 52379068
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttt 40  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  52379107 tgagaaatgatatttgtacatccactttttaataattttt 52379068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 13267427 - 13267366
Alignment:
Q  126 agagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    |||||||||||||||||| |||| |||||||| | ||||  ||| ||||||||||||||||||    
T  13267427 agagagaaaaacaaagttttcatcaaagttgtat-gaaatcgatttacaaatatcactactct 13267366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 15515909 - 15515967
Alignment:
Q  129 gagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactc 187  Q
    ||||||||||| |||||||| ||||||||||  ||| |||||| || ||||||||||||    
T  15515909 gagaaaaacaaggttgtcatcaaagttgttttcaaatagatgttcatatatcactactc 15515967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 35332705 - 35332747
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttga 43  Q
    |||||||||||||||||||||||| ||| | ||||||||||||    
T  35332705 tgagaaatgatatttgtacaaccactttatgataattttttga 35332747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 39880990 - 39880916
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactctat 190  Q
    ||||||||||||  ||||||||| |||||||||||||||||||| |  |||| || |||||| |||||||||| ||||    
T  39880990 gaccaatcaaaa--gagagaaaaccaaagttgtcatgaaagttg-tacgaaagagttgtacatatatcactacgctat 39880916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 53091291 - 53091253
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataatttt 39  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  53091291 tgagaaatgatatttgtacaaccactttgtaataatttt 53091253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 3968884 - 3968929
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||| ||| || ||||||||||    
T  3968884 tgagaaatgatatttgtacaaccattttctaacaactttttgacaa 3968929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4489870 - 4489825
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||| ||||| ||| ||| |||||||||||||    
T  4489870 tgagaaatgatatttgtataaccattttctaacaattttttgacaa 4489825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 12241169 - 12241242
Alignment:
Q  114 accaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactctat 190  Q
    |||||||||||  |||||||||| ||||||||||| || |||||  | ||| || ||||||||||||||||||||||    
T  12241169 accaatcaaaa--gagagaaaaataaagttgtcataaaggttgtaca-aaagagttgtacaaatatcactactctat 12241242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25140027 - 25139982
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||| | | |||||||||||||    
T  25140027 tgagaaatgatatttgtacaaccactttattacaattttttgacaa 25139982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25725766 - 25725721
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||| ||| || ||||||||||    
T  25725766 tgagaaatgatatttgtacaaccactttctaacaactttttgacaa 25725721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36812475 - 36812430
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||||||| ||| || |||| |||||    
T  36812475 tgagaaatgatatttgtacaaccaatttctaacaacttttggacaa 36812430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 40308444 - 40308485
Alignment:
Q  5 aaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||| || ||| |||||||||||||||||    
T  40308444 aaatgatatttgtacaatcattttataataattttttgacaa 40308485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 40755921 - 40755962
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttga 43  Q
    ||||||||||||||||||||||| ||| ||| ||||||||||    
T  40755921 gagaaatgatatttgtacaaccattttctaacaattttttga 40755962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 51389146 - 51389101
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||| ||| || ||||||||||    
T  51389146 tgagaaatgatatttgtacaaccactttgtaacaactttttgacaa 51389101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 55996421 - 55996466
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||| || ||| ||| |||||||||||||    
T  55996421 tgagaaatgatatttgtacaatcattttctaacaattttttgacaa 55996466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 389618 - 389545
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    ||||||||||||||||||  |||||||||||||||    ||||||| | |||||  ||||||||||||| ||||||    
T  389618 gaccaatcaaaatagaga--aaaacaaagttgtcaaagcagttgttcacaaaaaattgtacaaatatcattactct 389545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 1562607 - 1562563
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| ||| || ||||||||||    
T  1562607 gagaaatgatatttgtacaaccattttctaacaactttttgacaa 1562563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 12074222 - 12074178
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||    
T  12074222 gagaaatgatatttgtacaaccattttatgacaattttttgacaa 12074178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 17805460 - 17805496
Alignment:
Q  10 atatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||| | |||||||||||||||||||||    
T  17805460 atatttgtacaactattttttaataattttttgacaa 17805496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 31147231 - 31147275
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||    
T  31147231 gagaaatgatatttgtacaaccactttattacaattttttgacaa 31147275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 32079233 - 32079293
Alignment:
Q  128 agagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    |||||||||||| |||||||  |||||||||  ||||   |||||||||||||||||||||    
T  32079233 agagaaaaacaaggttgtcactaaagttgttatgaaatgtatgtacaaatatcactactct 32079293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 35824177 - 35824133
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||||||| || |||| |||||    
T  35824177 gagaaatgatatttgtacaaccattttttaacaacttttggacaa 35824133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 40722035 - 40721991
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||| ||| ||| ||||||||||| |||||    
T  40722035 gagaaatgatatttgtacatccattttataataatttttggacaa 40721991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 43358613 - 43358657
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||||||| ||| || |||| |||||    
T  43358613 gagaaatgatatttgtacaaccaatttctaacaacttttggacaa 43358657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 47998594 - 47998638
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| ||| || ||||||||||    
T  47998594 gagaaatgatatttgtacaaccattttgtaacaactttttgacaa 47998638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 51318703 - 51318747
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | |||| ||||||||||    
T  51318703 gagaaatgatatttgtacaaccactttgtgataactttttgacaa 51318747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 45)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 3585740 - 3585810
Alignment:
Q  116 caatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    ||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3585740 caatcaaaatagag--aaaaacaaagttgtcataaaagttgtttagaaaaagatgtacaaatatcactactct 3585810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 39744554 - 39744483
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactc 187  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  39744554 gaccaatcaaaatagaga--aaaacaaagttgtcatgaaagttgtttag-aaaaggtgtacaaatatcactactc 39744483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 13466035 - 13465960
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactctata 191  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||||    
T  13466035 gaccaatcaaaatagaga--aaaacaaagttgtcatggaagttgtttag-aaaaggtatacaaatatcactactctata 13465960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 10466135 - 10466075
Alignment:
Q  128 agagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    |||||||||||||||||||||||||||||| | |||| ||||||||| |||||||||||||    
T  10466135 agagaaaaacaaagttgtcatgaaagttgtcttgaaacagatgtacatatatcactactct 10466075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 29192596 - 29192535
Alignment:
Q  128 agagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactctat 190  Q
    ||||||||||||||||||||| ||||||||  ||||| |||||||||||||||||||||||||    
T  29192596 agagaaaaacaaagttgtcataaaagttgta-agaaagagatgtacaaatatcactactctat 29192535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 43356429 - 43356501
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    |||||||||||||||| |  ||||||||||||||||||||||||||||| |||| ||||| |||||||||| ||||    
T  43356429 gaccaatcaaaatagaaa--aaaacaaagttgtcatgaaagttgtttag-aaaatatgtataaatatcactgctct 43356501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 14797610 - 14797540
Alignment:
Q  115 ccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    |||||||||||||| |  |||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||    
T  14797610 ccaatcaaaatagaaa--aaaacaaagttgtcataaaaattgttta-aaaaaggtgtacaaatatcactactct 14797540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 11741934 - 11742008
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactcta 189  Q
    ||||||||||||||||||  |||| |||||||||||  ||| |||||||||| || | |||||||||||||||||||    
T  11741934 gaccaatcaaaatagaga--aaaagaaagttgtcatagaagatgtttagaaagaggtatacaaatatcactactcta 11742008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 36909792 - 36909732
Alignment:
Q  126 agagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactc 187  Q
    ||||||||||||||||||||||| |||||||| | ||||  |||||||||||||||||||||    
T  36909792 agagagaaaaacaaagttgtcatcaaagttgtat-gaaatggatgtacaaatatcactactc 36909732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 17826169 - 17826229
Alignment:
Q  126 agagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactact 186  Q
    |||||||||||||| ||||||||||||||||| |  ||| ||||||||| |||||||||||    
T  17826169 agagagaaaaacaaggttgtcatgaaagttgtcttaaaatagatgtacatatatcactact 17826229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 29192719 - 29192681
Alignment:
Q  5 aaatgatatttgtacaaccaatttttaataattttttga 43  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  29192719 aaatgatatttgtacaaccattttttaataattttttga 29192681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 39737633 - 39737572
Alignment:
Q  130 agaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactctataa 192  Q
    |||||||||||||| |||| ||| || ||||||||| | ||||||||||||||||||||||||    
T  39737633 agaaaaacaaagttatcataaaaattatttagaaaagg-tgtacaaatatcactactctataa 39737572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 31847660 - 31847717
Alignment:
Q  132 aaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactcta 189  Q
    |||||||| ||||||||||||||||| || |||  |||||||| ||||||||||||||    
T  31847660 aaaaacaaggttgtcatgaaagttgtctacaaatggatgtacatatatcactactcta 31847717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 6746329 - 6746402
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    |||||||||||||| |||  ||||| ||||||||||  |||||||| | ||| || ||||||||||||||||||||    
T  6746329 gaccaatcaaaataaaga--aaaaccaagttgtcattgaagttgttcataaagagttgtacaaatatcactactct 6746402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 13466146 - 13466102
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||||||| ||| |||||||| ||||    
T  13466146 gagaaatgatatttgtacaaccaatttctaacaattttttaacaa 13466102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 14797721 - 14797677
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||||||| ||| || ||||||||||    
T  14797721 gagaaatgatatttgtacaaccaatttctaacaactttttgacaa 14797677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 34442113 - 34442157
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | |||||||||||||||    
T  34442113 gagaaatgatatttgtacaaccactttatgataattttttgacaa 34442157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 3771370 - 3771409
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttt 40  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  3771370 tgagaaatgatatttgtacaatcattttttaataattttt 3771409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 12784471 - 12784432
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttt 40  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  12784471 tgagaaatgatatttgtacaaccattttataataattttt 12784432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 21738688 - 21738649
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttt 40  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  21738688 tgagaaatgatatttgtacaaccattttctaataattttt 21738649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 19916655 - 19916693
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttt 40  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  19916655 gagaaatgatatttgaacaaccactttttaataattttt 19916693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 24766152 - 24766190
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttt 40  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  24766152 gagaaatgatatttgtacaaccattttttaataactttt 24766190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 26290922 - 26290884
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttt 40  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  26290922 gagaaattatatttgtacaaccattttttaataattttt 26290884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 41715492 - 41715450
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttga 43  Q
    |||||||||||||| |||||||| |||| ||||||||||||||    
T  41715492 tgagaaatgatattagtacaaccgatttgtaataattttttga 41715450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 45420135 - 45420173
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttt 40  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  45420135 gagaaacgatatttgtacaaccattttttaataattttt 45420173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 12600047 - 12600092
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||| | |||||||| ||||||    
T  12600047 tgagaaatgatatttgtacaaccactttgtgataattttgtgacaa 12600092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32688616 - 32688571
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||| | | |||||||||||||    
T  32688616 tgagaaatgatatttgtacaaccactttctgacaattttttgacaa 32688571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 43356288 - 43356333
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||| ||||||||||||||||||||| ||| || ||||||||||    
T  43356288 tgagaattgatatttgtacaaccaatttctaacaactttttgacaa 43356333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 43665625 - 43665666
Alignment:
Q  5 aaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||| ||||||| || ||||||||||    
T  43665625 aaatgatatttgtacaaccactttttaacaactttttgacaa 43665666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 1052567 - 1052523
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||||||| || |||| |||||    
T  1052567 gagaaatgatatttgtacaaccattttttaacaacttttagacaa 1052523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 1889147 - 1889191
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||    
T  1889147 gagaaatgatatttgtacaaccactttctgacaattttttgacaa 1889191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 2308393 - 2308365
Alignment:
Q  2 gagaaatgatatttgtacaaccaattttt 30  Q
    |||||||||||||||||||||||||||||    
T  2308393 gagaaatgatatttgtacaaccaattttt 2308365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 6365186 - 6365230
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||    
T  6365186 gagaaatgatatttgtacaaccactttgtgacaattttttgacaa 6365230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 8352835 - 8352879
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||| | |||||||||| |||| |||||    
T  8352835 gagaaatgatatttgtacaactattttttaataacttttagacaa 8352879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 11980651 - 11980695
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| ||| || ||||||||||    
T  11980651 gagaaatgatatttgtacaaccattttctaacaactttttgacaa 11980695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 13553147 - 13553191
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | ||||||||| |||||    
T  13553147 gagaaatgatatttgtacaaccactttgtgataatttttggacaa 13553191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 13711061 - 13711105
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||||| |||| ||| ||||||    
T  13711061 gagaaatgatatttgtacaaccactttttgataactttgtgacaa 13711105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 31635881 - 31635837
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| ||| || ||||||||||    
T  31635881 gagaaatgatatttgtacaaccattttctaacaactttttgacaa 31635837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 32749998 - 32750042
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||||| | || ||||||||||    
T  32749998 gagaaatgatatttgtacaaccactttttcacaactttttgacaa 32750042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 33030173 - 33030129
Alignment:
Q  3 agaaatgatatttgtacaaccaatttt-taataattttttgacaa 46  Q
    ||||||||||||||||||||| ||||| | |||||||||||||||    
T  33030173 agaaatgatatttgtacaacccattttgtgataattttttgacaa 33030129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35705988 - 35705948
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataatttttt 41  Q
    |||||||||||||||||||||||| ||||  ||||||||||    
T  35705988 tgagaaatgatatttgtacaaccatttttgtataatttttt 35705948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 36587539 - 36587495
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||| ||||||| ||||| | |||||||||||||    
T  36587539 gagaaatgatatttgaacaaccattttttgacaattttttgacaa 36587495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 39247534 - 39247490
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | |||| ||||||||||    
T  39247534 gagaaatgatatttgtacaaccattttgtgataactttttgacaa 39247490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 39737757 - 39737713
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||||||| ||| || |||| |||||    
T  39737757 gagaaatgatatttgtacaaccaatttctaacaacttttggacaa 39737713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 41353568 - 41353524
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||| |||||| | |||||||||| ||||    
T  41353568 gagaaatgatatttgtacaatcaatttatgataattttttaacaa 41353524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 52678552 - 52678480
Alignment:
Q  114 accaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    |||||||||||||||||  ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  52678552 accaatcaaaatagaga--aaaacaaagttatcatgaaagttgtttagaaagagatgtacaaatatcactactct 52678480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 32008157 - 32008217
Alignment:
Q  128 agagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  32008157 agagaaaaacaaagttgtcatggaagttgtttagaaaaatatgtacaaatatcactactct 32008217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 51650722 - 51650789
Alignment:
Q  115 ccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactac 185  Q
    |||||||||||||||  |||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||    
T  51650722 ccaatcaaaatagag--aaaaacaaagttgtcatggaagttatttag-aaaaggtgtacaaatatcactac 51650789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 52678649 - 52678604
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||    
T  52678649 tgagaaatgacatttgtacaaccaatttctaataattttttgacaa 52678604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 51487872 - 51487930
Alignment:
Q  130 agaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactcta 189  Q
    ||||||| ||||||||||||||||||| | ||||| |||||||||||||||||| |||||    
T  51487872 agaaaaataaagttgtcatgaaagttg-taagaaagagatgtacaaatatcacttctcta 51487930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 52100260 - 52100299
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttt 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  52100260 tgagaaatgatatttgtacaaccattttttaataattttt 52100299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 28300285 - 28300330
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||| | |||||||||||||||    
T  28300285 tgagaaatgatatttgtacaaccattttattataattttttgacaa 28300330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 41369600 - 41369641
Alignment:
Q  5 aaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  41369600 aaatgatatttgtacaaccattttctaataattttttgacaa 41369641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 39604317 - 39604273
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| |||| || |||||||||||||    
T  39604317 gagaaatgatatttgtacaaccatttttcaacaattttttgacaa 39604273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 47849672 - 47849716
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | |||||||||||||||    
T  47849672 gagaaatgatatttgtacaaccattttgtgataattttttgacaa 47849716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 51032586 - 51032514
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    ||||||||||||  || ||||||  |||||||||||||||||||| || |||||| |||||| |||||||||||||    
T  51032586 gaccaatcaaaa--gatagaaaattaaagttgtcatgaaagttgtata-aaaaagttgtacatatatcactactct 51032514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 55466958 - 55467002
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| ||| |||||||||||||    
T  55466958 gagaaatgatatttgtacaaccattttataagaattttttgacaa 55467002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 349484 - 349446
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttt 40  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  349484 gagaaatgatatttgtacaaccattttataataattttt 349446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 26550237 - 26550275
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttt 40  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  26550237 gagaaatgatatttgcacaaccattttttaataattttt 26550275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 27168753 - 27168715
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttt 40  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  27168753 gagaaatgatatttgaacaaccattttttaataattttt 27168715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 38910492 - 38910526
Alignment:
Q  6 aatgatatttgtacaaccaatttttaataattttt 40  Q
    |||||||||||||||||||||||| ||||||||||    
T  38910492 aatgatatttgtacaaccaattttaaataattttt 38910526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 40159786 - 40159712
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactctat 190  Q
    ||||||||||||  ||||||||| |||||||||||||||||||| |   ||| || |||||| |||||||||||||||    
T  40159786 gaccaatcaaaa--gagagaaaaccaaagttgtcatgaaagttg-taccaaagagttgtacatatatcactactctat 40159712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 53681111 - 53681149
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttt 40  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  53681111 gagaaatgatatttgaacaaccactttttaataattttt 53681149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 20893314 - 20893269
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||| ||||||||||||||| ||| | |||||||||||||||    
T  20893314 tgagaaataatatttgtacaaccattttgtgataattttttgacaa 20893269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 31176512 - 31176467
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||| | ||||||||| |||||    
T  31176512 tgagaaatgatatttgtacaaccactttgtgataatttttagacaa 31176467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 35756102 - 35756155
Alignment:
Q  126 agagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatat 179  Q
    ||||||||||||||||||||||  ||||||||   |||| ||||||||||||||    
T  35756102 agagagaaaaacaaagttgtcaccaaagttgtcatgaaatagatgtacaaatat 35756155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 108431 - 108475
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||    
T  108431 gagaaatgatatttgtacaaccactttgtgacaattttttgacaa 108475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 5398918 - 5398962
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||    
T  5398918 gagaaatgatatttgtacaaccactttgtgacaattttttgacaa 5398962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 11335373 - 11335329
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| ||| || ||||||||||    
T  11335373 gagaaatgatatttgtacaaccattttctaacaactttttgacaa 11335329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 21579237 - 21579297
Alignment:
Q  128 agagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    |||||||||||||||||| ||  || || |||||||| ||||||| || ||||||||||||    
T  21579237 agagaaaaacaaagttgttatagaaattatttagaaagagatgtagaagtatcactactct 21579297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 32008033 - 32008077
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||| ||||||||||| ||| || ||||||||||    
T  32008033 gagaaatgatatttgcacaaccaatttctaacaactttttgacaa 32008077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 51032695 - 51032651
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| ||| || ||||||||||    
T  51032695 gagaaatgatatttgtacaaccattttctaacaactttttgacaa 51032651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 52727519 - 52727475
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||| || ||| | |||||||||||||||    
T  52727519 gagaaatgatatttgtacaatcactttatgataattttttgacaa 52727475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 53134023 - 53133979
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||| ||||| ||| |||||||||||| ||||    
T  53134023 gagaaatgatatttgtaaaaccattttataataattttttaacaa 53133979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 14095025 - 14095096
Alignment:
Q  116 caatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactcta 189  Q
    ||||||||||||||  |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  14095025 caatcaaaatagag--aaaaacaaagttgtcatggaagttgtttagaaagagatgtacaaatatcactactcta 14095096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 28883693 - 28883636
Alignment:
Q  128 agagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactact 186  Q
    ||||||||||||||||||||||||||||| | ||||| |||||||||||||||| ||||    
T  28883693 agagaaaaacaaagttgtcatgaaagttg-taagaaagagatgtacaaatatcattact 28883636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16743338 - 16743293
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||    
T  16743338 tgagaaatgatatttgtacaaccattttttaataatttttagacaa 16743293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 27102114 - 27102159
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||    
T  27102114 tgagaaatgatatttgtacaaccattttctaataattttttgacaa 27102159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 27143936 - 27143981
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||    
T  27143936 tgagaaatgatatttgtacaaccattttctaataattttttgacaa 27143981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28883820 - 28883775
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||    
T  28883820 tgagaaatgatatttgtacaaccattttttaataaccttttgacaa 28883775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 8778943 - 8778899
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||||||| || ||||||||||    
T  8778943 gagaaatgatatttgtacaaccattttttaacaactttttgacaa 8778899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 16368118 - 16368080
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttt 40  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  16368118 gagaaatgatatttgtacaaccattttataataattttt 16368080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 2822222 - 2822259
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataatttt 39  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  2822222 gagaaatgatatttgtacaaccattttataataatttt 2822259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 32253780 - 32253817
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataatttt 39  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  32253780 gagaaatgatatttgtacaaccactttttgataatttt 32253817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 34490350 - 34490391
Alignment:
Q  5 aaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||| ||||||| ||||||| |||||    
T  34490350 aaatgatatttgtacaaccattttttaacaatttttagacaa 34490391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 3821378 - 3821422
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||    
T  3821378 gagaaatgatatttgtacaaccactttattacaattttttgacaa 3821422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 9189015 - 9188971
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||||||| || |||| |||||    
T  9189015 gagaaatgatatttgtacaaccattttttaacaacttttagacaa 9188971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 9954548 - 9954592
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||||||| | | || ||||||||||    
T  9954548 gagaaatgatatttgtacaaccaatttgtgacaactttttgacaa 9954592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 11785355 - 11785399
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||    
T  11785355 gagaaatgatatttgtacaaccattttgtgacaattttttgacaa 11785399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 26391356 - 26391316
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttg 42  Q
    ||||||||||||||||||||||| ||||||| || ||||||    
T  26391356 gagaaatgatatttgtacaaccattttttaacaactttttg 26391316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 27102210 - 27102253
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgt 157  Q
    ||||||| |||| |||||||||| |||||||||||||||||||||    
T  27102210 gaccaattaaaa-agagagaaaatcaaagttgtcatgaaagttgt 27102253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 27144032 - 27144075
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgt 157  Q
    ||||||| |||| |||||||||| |||||||||||||||||||||    
T  27144032 gaccaattaaaa-agagagaaaatcaaagttgtcatgaaagttgt 27144075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 22647523 - 22647448
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactctat 190  Q
    ||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||    
T  22647523 gaccaatcaaaatagaga--aaaacaaagttgtcatggaagttgtttagaaaaagatgtataaatatcactgctctat 22647448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 32873109 - 32873037
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||||| ||||| |||||||||| |||||||||    
T  32873109 gaccaatcaaaatagaga--aaaacaaagttgtcatggaagttgtttag-aaaaggtgtacaaataccactactct 32873037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 39032762 - 39032707
Alignment:
Q  130 agaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactac 185  Q
    ||||||||||||||||||| ||||||||||||||| || |||||||||||||||||    
T  39032762 agaaaaacaaagttgtcataaaagttgtttagaaagaggtgtacaaatatcactac 39032707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 6046424 - 6046500
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgt----catgaaagttgtttagaaaaagatgtacaaatatcactactc 187  Q
    ||||||||||||||||||  |||||||||||||    ||| ||||||||||||||| |||||||||||||||| |||||    
T  6046424 gaccaatcaaaatagaga--aaaacaaagttgttcgtcataaaagttgtttagaaagagatgtacaaatatcagtactc 6046500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 40829413 - 40829452
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttt 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  40829413 tgagaaatgatatttgtacaaccattttttaataattttt 40829452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32873221 - 32873176
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||||||| ||| || ||||||||||    
T  32873221 tgagaaatgatatttgtacaaccaatttctaacaactttttgacaa 32873176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36416134 - 36416089
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||| ||| |||||||||||||    
T  36416134 tgagaaatgatatttgtacaaccattttctaacaattttttgacaa 36416089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 29402182 - 29402226
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||| || ||| |||||||||||||||||    
T  29402182 gagaaatgatatttgtacaatcactttgtaataattttttgacaa 29402226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 8087800 - 8087843
Alignment:
Q  3 agaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||| ||||||||||||||| ||| |||||||||||||||||    
T  8087800 agaaataatatttgtacaaccactttctaataattttttgacaa 8087843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 285229 - 285271
Alignment:
Q  4 gaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||    
T  285229 gaaatgatatttgtagaaccattttctaataattttttgacaa 285271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 6940221 - 6940183
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttt 40  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  6940221 gagaaatgatatttgtacaaccattttataataattttt 6940183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 14914492 - 14914553
Alignment:
Q  126 agagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    ||||| ||||||||||||||||| |||||| | | ||||  ||||||||||||||||||||||    
T  14914492 agagataaaaacaaagttgtcatcaaagttatat-gaaatggatgtacaaatatcactactct 14914553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 4719649 - 4719678
Alignment:
Q  1 tgagaaatgatatttgtacaaccaattttt 30  Q
    ||||||||||||||||||||||||||||||    
T  4719649 tgagaaatgatatttgtacaaccaattttt 4719678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 12718452 - 12718407
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||||||| | | || ||||||||||    
T  12718452 tgagaaatgatatttgtacaaccaatttgtgacaactttttgacaa 12718407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 12779678 - 12779633
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||||||| | | || ||||||||||    
T  12779678 tgagaaatgatatttgtacaaccaatttgtgacaactttttgacaa 12779633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 20125388 - 20125433
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||| | | |||||||||||||    
T  20125388 tgagaaatgatatttgtacaaccactttattacaattttttgacaa 20125433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31708369 - 31708414
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||| ||| || ||||||||||    
T  31708369 tgagaaatgatatttgtacaaccattttataacaactttttgacaa 31708414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 36416022 - 36415980
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgt 157  Q
    ||||||||||||  ||||||||| |||||||||||||||||||||    
T  36416022 gaccaatcaaaa--gagagaaaaccaaagttgtcatgaaagttgt 36415980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36581537 - 36581492
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||| | ||||||||| |||||    
T  36581537 tgagaaatgatatttgtacaaccactttgtgataatttttagacaa 36581492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 2050927 - 2050971
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| ||| ||||||| |||||    
T  2050927 gagaaatgatatttgtacaaccattttgtaacaatttttggacaa 2050971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 5996667 - 5996711
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||| | ||||||| ||||||| |||||    
T  5996667 gagaaatgatatttgtacaactattttttaacaatttttagacaa 5996711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 22647632 - 22647588
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||| ||||||||||| ||| || ||||||||||    
T  22647632 gagaaatgatatttgcacaaccaatttctaacaactttttgacaa 22647588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 27340869 - 27340913
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||| || ||| | |||||||||||||||    
T  27340869 gagaaatgatatttgtacaatcactttattataattttttgacaa 27340913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 29807073 - 29807029
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||| ||||||||||||| ||||||| ||| |||||||||    
T  29807073 gagaaatgacatttgtacaaccattttttaacaatcttttgacaa 29807029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 38500943 - 38500987
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||    
T  38500943 gagaaatgatatttgtacaaccattttgtgacaattttttgacaa 38500987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 39191905 - 39191861
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||| |||||| ||| ||||||| |||||||||||||    
T  39191905 gagaaatgatatatgtacatccactttttaacaattttttgacaa 39191861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 30196823 - 30196898
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactctat 190  Q
    ||||||||||||||||||  |||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  30196823 gaccaatcaaaatagaga--aaaataaagttgtcatgaaagttgtttagaaagaggtgtacaaatatcactactctat 30196898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 3606056 - 3605983
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    ||||||||||||||||||  ||||||||||| ||||| || |||||||||||||||||||||||||||||||||||    
T  3606056 gaccaatcaaaatagaga--aaaacaaagttatcatggaaattgtttagaaaaagatgtacaaatatcactactct 3605983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 27810174 - 27810103
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactc 187  Q
    ||||||||||||||||||  || |||||||||||||| ||||||||||| ||||| |||||||||| ||||||||    
T  27810174 gaccaatcaaaatagaga--aatacaaagttgtcatggaagttgtttag-aaaaggtgtacaaataccactactc 27810103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 48871901 - 48871843
Alignment:
Q  129 gagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactc 187  Q
    ||||||||||| ||||||||||||||||| | |||| ||||||||| ||||||||||||    
T  48871901 gagaaaaacaaggttgtcatgaaagttgtcttgaaatagatgtacatatatcactactc 48871843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 15182531 - 15182471
Alignment:
Q  127 gagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    |||||||||| |||||||||||||||||||   ||||| |||||||||||||||||||||||    
T  15182531 gagagaaaaataaagttgtcatgaaagttg-aaagaaagagatgtacaaatatcactactct 15182471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 30505298 - 30505232
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatca 181  Q
    |||||||||||||| |||  |||||||||||||||| ||| || |||||||||||||| ||||||||||    
T  30505298 gaccaatcaaaataaaga--aaaacaaagttgtcataaaaattatttagaaaaagatggacaaatatca 30505232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 30505408 - 30505363
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||    
T  30505408 tgagaaatgatatttgtacaaccaatttctaacaattttttgacaa 30505363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 42615859 - 42615904
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||| || |||||||||||||||||||||    
T  42615859 tgagaaatgatatttgtacaatcattttttaataattttttgacaa 42615904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 21441750 - 21441818
Alignment:
Q  116 caatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactc 187  Q
    ||||||||||||| |  ||||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||    
T  21441750 caatcaaaatagaaa--aaaacaaagttgtcatggaagttgtttag-aaaaggtgtacaaatatcattactc 21441818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3606166 - 3606121
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||||||| ||| || ||||||||||    
T  3606166 tgagaaatgatatttgtacaaccaatttctaacaactttttgacaa 3606121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 49621362 - 49621407
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||| ||||||||||| |||||    
T  49621362 tgagaaatgatatttgtacaaccattttgtaataatttttagacaa 49621407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 27810318 - 27810274
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||||||| ||| || ||||||||||    
T  27810318 gagaaatgatatttgtacaaccaatttctaacaactttttgacaa 27810274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 30439250 - 30439294
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||||||| | | |||||||||||||    
T  30439250 gagaaatgatatttgtacaaccaatttatgacaattttttgacaa 30439294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 34157520 - 34157563
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||    
T  34157520 gagaaatgatatttgtacaacc-atttttaataattttttaacaa 34157563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 36690643 - 36690599
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||||||| | | |||||||||||||    
T  36690643 gagaaatgatatttgtacaaccaatttctcacaattttttgacaa 36690599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 36706744 - 36706700
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||||||| | | |||||||||||||    
T  36706744 gagaaatgatatttgtacaaccaatttctcacaattttttgacaa 36706700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 43755749 - 43755705
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | |||||||||||||||    
T  43755749 gagaaatgatatttgtacaaccattttatgataattttttgacaa 43755705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 3826776 - 3826708
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcact 183  Q
    |||||||||||||| |||  |||| |||||||||||  |||||||| | |||||| |||||||||||||||    
T  3826776 gaccaatcaaaataaaga--aaaataaagttgtcattgaagttgttcataaaaagttgtacaaatatcact 3826708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 8905852 - 8905910
Alignment:
Q  128 agagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactc 187  Q
    |||||||||||||||| | |||||||||| | ||||| |||||||||||||||| |||||    
T  8905852 agagaaaaacaaagttattatgaaagttg-taagaaagagatgtacaaatatcattactc 8905910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 23554751 - 23554789
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttt 40  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  23554751 gagaaatgatatttgtacaaccattttttgataattttt 23554789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 25130825 - 25130887
Alignment:
Q  126 agagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    |||||||||||||| |||||||  ||||||||   |||| |||||||||||||||||| ||||    
T  25130825 agagagaaaaacaaggttgtcactaaagttgtcatgaaatagatgtacaaatatcactgctct 25130887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 3919299 - 3919344
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||| | ||||||||| |||||    
T  3919299 tgagaaatgatatttgtacaaccattttgttataatttttggacaa 3919344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 5315210 - 5315255
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||  ||| | |||||||||||||||    
T  5315210 tgagaaatgatatttgtacaacctctttattataattttttgacaa 5315255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 49699824 - 49699779
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||| | |||||||||| ||||    
T  49699824 tgagaaatgatatttgtacaaccattttatgataattttttaacaa 49699779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 51193082 - 51193021
Alignment:
Q  126 agagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactc 187  Q
    |||||||||||||| |||||||||||||||||    |||  |||||||| ||||||||||||    
T  51193082 agagagaaaaacaatgttgtcatgaaagttgtcatcaaatggatgtacatatatcactactc 51193021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 18541122 - 18541078
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| ||| || ||||||||||    
T  18541122 gagaaatgatatttgtacaaccattttctaacaactttttgacaa 18541078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 24910205 - 24910161
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||| |||||| ||| ||||||| |||||||||||||    
T  24910205 gagaaatgatatatgtacatccactttttaacaattttttgacaa 24910161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 25989055 - 25989011
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||||||| || |||| |||||    
T  25989055 gagaaatgatatttgtacaaccattttttaacaacttttagacaa 25989011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 26501295 - 26501339
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| |||||| |||| |||||    
T  26501295 gagaaatgatatttgtacaaccattttgtaataacttttggacaa 26501339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 39669806 - 39669850
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||    
T  39669806 gagaaatgatatttgtacaaccattttgtgacaattttttgacaa 39669850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 40605492 - 40605448
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||  ||||| ||||||||| |||||    
T  40605492 gagaaatgatatttgtacaacctttttttgataatttttagacaa 40605448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 44112454 - 44112498
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||    
T  44112454 gagaaatgatatttgtacaaccactttattacaattttttgacaa 44112498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 44641974 - 44641930
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||    
T  44641974 gagaaatgatatttgtacaaccactttattacaattttttgacaa 44641930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 44672101 - 44672057
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||| || ||||||| || ||||||||||    
T  44672101 gagaaatgatatttgtacaatcattttttaacaactttttgacaa 44672057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 45042261 - 45042305
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||| | ||| ||| |||||||||||||    
T  45042261 gagaaatgatatttgtacaactattttctaacaattttttgacaa 45042305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 49596235 - 49596279
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||    
T  49596235 gagaaatgatatttgtacaaccattttattacaattttttgacaa 49596279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 50062045 - 50062001
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||| ||| ||| | |||||||||||||||    
T  50062045 gagaaatgatatttgtacatccactttatgataattttttgacaa 50062001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 52233292 - 52233248
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||    
T  52233292 gagaaatgatatttgtacaaccattttctcacaattttttgacaa 52233248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 44)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 45081510 - 45081583
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    |||||||||||||||||  ||||||||| |||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  45081510 gaccaatcaaaatagag--aaaaacaaaattgttatggaagttgtttagaaaaagatatacaaatatcactactct 45081583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 12960052 - 12960123
Alignment:
Q  116 caatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactcta 189  Q
    |||||||||||||||  |||| |||||||||||  |||||||||||||||||||||||||| ||||||||||||    
T  12960052 caatcaaaatagaga--aaaataaagttgtcatagaagttgtttagaaaaagatgtacaaagatcactactcta 12960123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 1158292 - 1158220
Alignment:
Q  116 caatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactctata 191  Q
    ||||||||||||| |  ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  1158292 caatcaaaatagaaa--aaaacaaagttgtcatgaaagttatttag-aaaaggtgtacaaatatcactactctata 1158220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 31825029 - 31824961
Alignment:
Q  116 caatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactc 187  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||    
T  31825029 caatcaaaatagaga--aaaacaaagttgtcatggaagttgtttag-aaaaggtgtacaaatatcactactc 31824961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 12659275 - 12659336
Alignment:
Q  128 agagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactcta 189  Q
    |||||||||||||||| ||||| ||||||| |||||| || |||||||||||||||||||||    
T  12659275 agagaaaaacaaagttatcatggaagttgtatagaaagaggtgtacaaatatcactactcta 12659336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 7376634 - 7376704
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactact 186  Q
    ||||||||||||||||||  |||| ||| ||||||| |||||||||||| |||||||||| |||||||||||||    
T  7376634 gaccaatcaaaatagaga--aaaataaaattgtcataaaagttgtttag-aaaagatgtataaatatcactact 7376704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 14548895 - 14548850
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||    
T  14548895 tgagaaatgatatttgtacaaccattttttaataatttttagacaa 14548850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 30943911 - 30943866
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||||||||||| || ||||||||||    
T  30943911 tgagaaatgatatttgtacaaccaatttttaacaactttttgacaa 30943866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 3650113 - 3650157
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||    
T  3650113 gagaaatgatatttgtacaaccaatttgtaataattttttaacaa 3650157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 7129655 - 7129718
Alignment:
Q  126 agagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactctat 190  Q
    ||||||||||||||||||||||| |||||||| | ||||   |||||||||||||||||||||||    
T  7129655 agagagaaaaacaaagttgtcatcaaagttgtat-gaaatgaatgtacaaatatcactactctat 7129718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 9431245 - 9431173
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    ||||||||||||||||||  |||||||| ||||||| ||| ||||||| |||||  ||||||||||||||||||||    
T  9431245 gaccaatcaaaatagaga--aaaacaaaattgtcataaaaattgttta-aaaaatgtgtacaaatatcactactct 9431173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 12659052 - 12659096
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||||||||||| || ||||||||||    
T  12659052 gagaaatgatatttgtacaaccaatttttaacaactttttgacaa 12659096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 42716320 - 42716364
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  42716320 gagaaatgatatttgtacaaccactttttcataattttttgacaa 42716364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 34299363 - 34299293
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    ||||||||||||||||   ||||||||| |||||||  |||||||||||||| ||  |||||||||||||||||||    
T  34299363 gaccaatcaaaataga---aaaaacaaaattgtcatagaagttgtttagaaagag--gtacaaatatcactactct 34299293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 45081397 - 45081435
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataatttt 39  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  45081397 tgagaaatgatatttgtacaaccaatttttaacaatttt 45081435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3775943 - 3775898
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||| |||||||||||||||| ||| |||||||||||||||||    
T  3775943 tgagaaaggatatttgtacaaccattttgtaataattttttgacaa 3775898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 20473778 - 20473823
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||| ||| |||||||||||||    
T  20473778 tgagaaatgatatttgtacaaccattttataacaattttttgacaa 20473823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31806298 - 31806343
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||| ||| |||||||||||||    
T  31806298 tgagaaatgatatttgtacaaccattttctaacaattttttgacaa 31806343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 40608512 - 40608557
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||| |||||| ||| |||||||||||||    
T  40608512 tgagaaatgatatttgtacaatcaatttctaacaattttttgacaa 40608557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 10344454 - 10344514
Alignment:
Q  130 agaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactctat 190  Q
    |||||||||| |||||||| |||||||||   ||| ||||||||| |||||||||||||||    
T  10344454 agaaaaacaaggttgtcataaaagttgttatcaaatagatgtacatatatcactactctat 10344514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 12959938 - 12959982
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||| ||||||||||| ||| |||||||||||||    
T  12959938 gagaaatgatatttgcacaaccaatttctaacaattttttgacaa 12959982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 40608624 - 40608696
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactc 187  Q
    |||||||||||||| |||  |||||||| ||||||| ||| || |||||||| |||| ||||| |||||||||||    
T  40608624 gaccaatcaaaataaaga--aaaacaaaattgtcataaaaattatttagaaagagatatacaagtatcactactc 40608696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 1158406 - 1158368
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttt 40  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  1158406 gagaaatgatatttgtacaaccaatttctaataactttt 1158368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 45405531 - 45405569
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttt 40  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  45405531 gagaaatgatatatgtacaaccattttttaataattttt 45405569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 3950110 - 3950151
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttga 43  Q
    ||||||||||||||||||||||| ||| | ||||||||||||    
T  3950110 gagaaatgatatttgtacaaccattttattataattttttga 3950151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 10553155 - 10553110
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||| | | |||||||||||||    
T  10553155 tgagaaatgatatttgtacaaccactttctgacaattttttgacaa 10553110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 30943784 - 30943732
Alignment:
Q  130 agaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcact 183  Q
    ||||||||||||||||||  |||||||||| |||| || |||||||||||||||    
T  30943784 agaaaaacaaagttgtcaataaagttgttt-gaaagagttgtacaaatatcact 30943732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 43873763 - 43873718
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||| | | |||||||||||||    
T  43873763 tgagaaatgatatttgtacaaccattttgtgacaattttttgacaa 43873718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 1332539 - 1332495
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||| ||||||||||| ||| ||| |||||||||||||    
T  1332539 gagaaatgataattgtacaaccattttataacaattttttgacaa 1332495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 3988905 - 3988949
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| ||| || ||||||||||    
T  3988905 gagaaatgatatttgtacaaccactttctaacaaatttttgacaa 3988949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 6849539 - 6849495
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||||||  || ||||| |||||||    
T  6849539 gagaaatgatatttgtacaaccaatttgcaacaatttgttgacaa 6849495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 8841030 - 8841074
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||    
T  8841030 gagaaatgatatttgtacaaccactttgtgagaattttttgacaa 8841074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 9431356 - 9431312
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||| ||||||||| |||||| ||| |||||||||||||    
T  9431356 gagaaatgatctttgtacaatcaatttctaacaattttttgacaa 9431312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 9738764 - 9738720
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||    
T  9738764 gagaaatgatatttgtacaaccactttctcacaattttttgacaa 9738720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 14029314 - 14029270
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||| || |||||| | |||||||||||||||    
T  14029314 gagaaatgatatttgtataatcaatttgtgataattttttgacaa 14029270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 20852919 - 20852963
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | ||||||||| |||||    
T  20852919 gagaaatgatatttgtacaaccattttatgataatttttagacaa 20852963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 29910283 - 29910239
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||| ||||||| ||| | |||||||||||||||    
T  29910283 gagaaatgatatttgcacaaccactttattataattttttgacaa 29910239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 32725851 - 32725807
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | ||||||||| |||||    
T  32725851 gagaaatgatatttgtacaaccactttgtgataatttttagacaa 32725807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 34996431 - 34996387
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||    
T  34996431 gagaaatgatatttgtacaaccactttattacaattttttgacaa 34996387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 35818937 - 35818981
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||| ||||||| ||| ||| |||||||||||||    
T  35818937 gagaaatgatatttgcacaaccattttctaacaattttttgacaa 35818981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 39021514 - 39021470
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | |||| ||||||||||    
T  39021514 gagaaatgatatttgtacaaccattttgtgataactttttgacaa 39021470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 40102023 - 40102067
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||||| | || ||||||||||    
T  40102023 gagaaatgatatttgtacaaccactttttcacaactttttgacaa 40102067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 40842014 - 40842058
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | |||| ||||||||||    
T  40842014 gagaaatgatatttgtacaaccactttgtgataactttttgacaa 40842058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 44711978 - 44712022
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||| |||||  ||||| |||||||||||||||||    
T  44711978 gagaaatgatatttatacaattaatttgtaataattttttgacaa 44712022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 21037183 - 21037123
Alignment:
Q  128 agagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    |||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||    
T  21037183 agagaaaaacaaagttgtcatggaagttgtttagaaagaggtgtacaaatatcactactct 21037123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 9055378 - 9055450
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    ||||||||||||||||||  ||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||    
T  9055378 gaccaatcaaaatagaga--aaaacgaagttgtcatggaagttgtttag-aaaaggtgtacaaatatcactactct 9055450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 2756879 - 2756807
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    ||||||||||||||||||  ||||||||||||||||| ||||| ||||| ||||| |||||||||| |||||||||    
T  2756879 gaccaatcaaaatagaga--aaaacaaagttgtcatggaagttatttag-aaaaggtgtacaaataccactactct 2756807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 42467204 - 42467247
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgaca 45  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||    
T  42467204 gagaaatgatatttgtacaaccattttttaataatttttagaca 42467247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 37149420 - 37149362
Alignment:
Q  130 agaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    |||||||||| |||||||| |||||||| | |||| ||||||||| |||||||||||||    
T  37149420 agaaaaacaaggttgtcataaaagttgtcttgaaatagatgtacatatatcactactct 37149362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 21153163 - 21153236
Alignment:
Q  113 gaccaatcaaaatagagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactcta 189  Q
    ||||||||||||  ||||||||| |||||||||||||||||||||    |||||| |||||| ||||||||||||||    
T  21153163 gaccaatcaaaa--gagagaaaatcaaagttgtcatgaaagttgtacc-aaaaagttgtacatatatcactactcta 21153236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 30769607 - 30769547
Alignment:
Q  127 gagagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    |||||||||||||||||||||||||||||| | ||||| |||| ||||||||| ||| ||||    
T  30769607 gagagaaaaacaaagttgtcatgaaagttg-taagaaagagatttacaaatattactgctct 30769547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 33212041 - 33212086
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||| ||| |||||||||||||    
T  33212041 tgagaaatgatatttgtacaaccattttctaacaattttttgacaa 33212086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 9055267 - 9055311
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||||||| ||| || ||||||||||    
T  9055267 gagaaatgatatttgtacaaccaatttctaacaactttttgacaa 9055311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 28081853 - 28081809
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| |||||||||||| ||||    
T  28081853 gagaaatgatatttgtacaaccattttgtaataatttttttacaa 28081809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 43025809 - 43025853
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||    
T  43025809 gagaaatgatatttgtacaaccactttttgataattttatgacaa 43025853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 2756999 - 2756956
Alignment:
Q  3 agaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||||| ||| || ||||||||||    
T  2756999 agaaatgatatttgtacaaccaatttctaacaactttttgacaa 2756956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 2790178 - 2790221
Alignment:
Q  3 agaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||| ||| ||| |||||||||||||    
T  2790178 agaaatgatatttgtacaaccactttgtaacaattttttgacaa 2790221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 21153052 - 21153094
Alignment:
Q  4 gaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||| || ||| |||||||||||||||||    
T  21153052 gaaatgatatttgtacaatcattttctaataattttttgacaa 21153094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 41815279 - 41815321
Alignment:
Q  150 aaagttgtttagaaaaagatgtacaaatatcactactctataa 192  Q
    ||||||||||||||| || ||||||||||||| ||||||||||    
T  41815279 aaagttgtttagaaagaggtgtacaaatatcattactctataa 41815321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17500696 - 17500741
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||| | |||| ||||||||||    
T  17500696 tgagaaatgatatttgtacaaccactttattataactttttgacaa 17500741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17552518 - 17552473
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||||| ||| | |||| ||||||||||    
T  17552518 tgagaaatgatatttgtacaaccactttattataactttttgacaa 17552473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 23329901 - 23329946
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||| ||||||||||||| ||| | |||||||||||||||    
T  23329901 tgagaaatgacatttgtacaaccattttattataattttttgacaa 23329946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 23844964 - 23845009
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||||| | ||| |||||||||| ||||||    
T  23844964 tgagaaatgatatttgtacaacaattttgtaataattttgtgacaa 23845009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 47644708 - 47644749
Alignment:
Q  5 aaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||| ||| | |||||||||||||||    
T  47644708 aaatgatatttgtacaaccactttattataattttttgacaa 47644749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 16567316 - 16567360
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | |||| ||||||||||    
T  16567316 gagaaatgatatttgtacaaccattttattataactttttgacaa 16567360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 16598346 - 16598302
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | |||| ||||||||||    
T  16598346 gagaaatgatatttgtacaaccattttattataactttttgacaa 16598302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 25200431 - 25200391
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataatttttt 41  Q
    |||||||||||||||||||||||||||| | | ||||||||    
T  25200431 tgagaaatgatatttgtacaaccaatttgtgacaatttttt 25200391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 25940703 - 25940659
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| ||| ||||||| |||||    
T  25940703 gagaaatgatatttgtacaaccattttgtaacaatttttagacaa 25940659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 27075470 - 27075514
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||| ||||| ||||||| | |||||||||||    
T  27075470 gagaaatgatatttgtataaccattttttaacagttttttgacaa 27075514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 27202841 - 27202797
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||| ||||| ||||||| | |||||||||||    
T  27202841 gagaaatgatatttgtataaccattttttaacagttttttgacaa 27202797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 36920804 - 36920847
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||| ||| |||||||| |||||||||||||    
T  36920804 gagaaatgatatttgtactacc-atttttaacaattttttgacaa 36920847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 38023495 - 38023451
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | ||||||||| |||||    
T  38023495 gagaaatgatatttgtacaaccactttgtgataatttttagacaa 38023451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 40212560 - 40212516
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||| ||||||||||||||| ||| ||| |||||||||||||    
T  40212560 gagaaataatatttgtacaaccactttctaacaattttttgacaa 40212516  T

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Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 41966332 - 41966376
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||    
T  41966332 gagaaatgatatttgtacaaccactttgtgacaattttttgacaa 41966376  T

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Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 43079703 - 43079659
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | ||||||||| |||||    
T  43079703 gagaaatgatatttgtacaaccactttgtgataatttttggacaa 43079659  T

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Target: scaffold0238 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 16387 - 16431
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | |||||||||||||||    
T  16387 gagaaatgatatttgtacaaccactttattataattttttgacaa 16431  T

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Target: scaffold0087 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 27009 - 26950
Alignment:
Q  128 agagaaaaacaaagttgtcatgaaagttgtttagaaaaagatgtacaaatatcactactct 188  Q
    |||||||||||||||| |||| |||||| |  ||||| |||||||||||||||||||||||    
T  27009 agagaaaaacaaagttatcataaaagttata-agaaagagatgtacaaatatcactactct 26950  T

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Target: scaffold0087; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 27134 - 27090
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| || |||| ||| |||||||||    
T  27134 gagaaatgatatttgtacaaccatttcttaacaatcttttgacaa 27090  T

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Target: scaffold0178 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 9775 - 9814
Alignment:
Q  1 tgagaaatgatatttgtacaaccaatttttaataattttt 40  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  9775 tgagaaatgatatttgtacaaccatttttttataattttt 9814  T

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Target: scaffold0504 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 10806 - 10762
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||    
T  10806 gagaaatgatatttgtacaaccactttattacaattttttgacaa 10762  T

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Target: scaffold0154 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 4315 - 4359
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | |||| ||||||||||    
T  4315 gagaaatgatatttgtacaaccattttatgataactttttgacaa 4359  T

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Target: scaffold0154; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 9919 - 9875
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    |||||||||||||||||||| || ||||| | |||||||||||||    
T  9919 gagaaatgatatttgtacaatcattttttcacaattttttgacaa 9875  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 36002 - 36046
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||| | ||| | |||||||||||||||    
T  36002 gagaaatgatatttgtacaactactttgtgataattttttgacaa 36046  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 199266 - 199310
Alignment:
Q  2 gagaaatgatatttgtacaaccaatttttaataattttttgacaa 46  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||    
T  199266 gagaaatgatatttgtacaaccactttattacaattttttgacaa 199310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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