View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18556_high_8 (Length: 334)
Name: NF18556_high_8
Description: NF18556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18556_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 10029442 - 10029747
Alignment:
| Q |
19 |
catctgaaccacattcaatttcagcatctttcaccacctgcagtttaagtcttgtttggtttagctctccctctagtgaagttatttttgaagaattctg |
118 |
Q |
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| T |
10029442 |
catctgaaccacattcaatttcagcatctttcaccacctgcagtttaagtcttgtttggtttagctcttcctctagtgaagttatttttgaagaattctg |
10029541 |
T |
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| Q |
119 |
agttgaactctctctggttttctcgagtgatatcctttaatttccttctgaagtttctttttgagtgattccac-----ctcgaacatcagcgatattgt |
213 |
Q |
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|||| |||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||| ||||||||||||| |||| | |
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| T |
10029542 |
agttaaactctctctggttttctcgagtgatattc-----tttccttctgaagtttcttgttgagtgattccacagaaactcgaacatcagcaatatcat |
10029636 |
T |
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| Q |
214 |
ttgttgctcggtttagattcaatttcgcttgcttcaattcccttaaaattaagcctggattcgccgaattggaaggaacacgacttccatggttttcctt |
313 |
Q |
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| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
10029637 |
tcgttgttcggtttagattcaatttcgcttgcttcaattcccttaaaattaagcctggactcgccgaattggaaggaacacgactcccatggttttcctt |
10029736 |
T |
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| Q |
314 |
ttcttcttctt |
324 |
Q |
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||||||||||| |
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| T |
10029737 |
ttcttcttctt |
10029747 |
T |
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