View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18556_low_1 (Length: 1006)
Name: NF18556_low_1
Description: NF18556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18556_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 952; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 952; E-Value: 0
Query Start/End: Original strand, 17 - 996
Target Start/End: Original strand, 39081856 - 39082835
Alignment:
| Q |
17 |
agaaaactgggttattatgatgcttgtggtacaaacaatccaattgatgattgttggagatgtgaccccaattgggaaaataaccgcaagagactagcag |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39081856 |
agaaaactgggttattatgatgcttgtggtacaaacaatccaattgatgattgttggagatgtgaccccaattgggaaaacaaccgcaagagactagcag |
39081955 |
T |
|
| Q |
117 |
aatgtgctattgggttcggtagacgtgcaattggaggtaaagatggaaaatattacatggtcattgactcaagtgatgaccctgtgaatcctaagccagg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39081956 |
aatgtgctattgggttcggtagacgtgcaattggaggtaaagatggaaaatattacatggtcattgactcaagtgatgaccctgtgaatcctaagccagg |
39082055 |
T |
|
| Q |
217 |
aacattaagacatgctgttatccaacaagagcctttatggatcattttcaagcatgacatggtgatcaaactaaagatggatcttctcatgaactctttc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39082056 |
aacattaagacatgctgttatccaacaagagcctttatggatcattttcaagcatgacatggtgatcaaactaaagatggatcttctcatgaattctttc |
39082155 |
T |
|
| Q |
317 |
aaaacaattgatggtagaggtgtaaatgtacacattgctgaaggaccatgtattagaatacaagaaaagaccaacatcataattcatggtatacacattc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39082156 |
aaaacaattgatggtagaggtgtaaatgtacacattgctgaaggaccatgtattagaatacaagaaaagaccaacatcataattcatggtatacacattc |
39082255 |
T |
|
| Q |
417 |
atcattgtgtacgaggtggtagtggttatgtgagtgactctcctaaccatcgtgttaggaaagaaagatcggatggtgatgggattacaatatatggtgc |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39082256 |
atcattgtgtacgaggtggtagtggttatgtgagtgactctcctaaccatcgtgttaggaaagaaagatcggatggtgatgggattacaatatatggtgc |
39082355 |
T |
|
| Q |
517 |
ggctcatatttgggtggatcattgttccttgtcaaattgttttgacggtttgattgatgttgttcatggatcaacggctgttactatttctaataattat |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39082356 |
ggctcatatttgggtggatcattgttccttgtcaaattgttttgacggtttgattgatgttgttcatggatcaacggctgttactatttctaataattat |
39082455 |
T |
|
| Q |
617 |
atgacacgtcataacaaagttatgctctttggtcatagtgattcctatgaaggggacaaaaatatgcaagctactatagcttttaaccattttggagaag |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39082456 |
atgacacgtcataacaaagttatgctctttggtcatagtgattcctatgaaggggacaaaaatatgcaagctactatagcttttaaccattttggagaag |
39082555 |
T |
|
| Q |
717 |
ggcttgggggaagaatgccaaggttcgtaaattagttaatttttctctgccacaataattaagccctacttgccatttgttatatatttttactctttat |
816 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39082556 |
ggcttgggggaagaatgccaaggtttgtaaattagttaatttttctctgccacaataattaagccctacttgccatttgttatatatttttactctttat |
39082655 |
T |
|
| Q |
817 |
ttcgagagattagtcctaacagtttgaatatttttctacacaaatgttgcaggtgcaggttcggatactttcacgtggtcaacaatgattatacacattg |
916 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39082656 |
tttgagagattagtcctaacagtttgaatatttttctacacaaatgttgcaggtgcaggttcggatactttcatgtggtcaacaatgattatacacattg |
39082755 |
T |
|
| Q |
917 |
gcaacaatatgcaatcggtggaagttcgtccccaactattttcagtcaaggcaatagatttctagctccagatgatgatg |
996 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
39082756 |
gcaacaatatgcaattggtggaagttcgtccccaactatttttagtcaaggcaatagatttctagctccagatgatgatg |
39082835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 463 - 996
Target Start/End: Original strand, 31726939 - 31727458
Alignment:
| Q |
463 |
ccatcgtgttaggaaagaaagatcggatggtgatgggattacaatatatggtgcggctcatatttgggtggatcattgttccttgtcaaattgttttgac |
562 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31726939 |
ccatcgtgttaggaaagaaagatcggatggtgatgggatcacaatctatggtgcggctcatatttgggtggatcattgttccttgtcaaattgttttgat |
31727038 |
T |
|
| Q |
563 |
ggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatatgacacgtcataacaaagttatgctctttggtcatagtgattcct |
662 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31727039 |
ggtttcattgatgttgttcatggatcaacggctgttactatttctaataattatatgacccgtcataacaaagttatgctctttggtcatagtgattcct |
31727138 |
T |
|
| Q |
663 |
atgaaggggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttgggggaagaatgccaaggttcgtaaattagttaatttttct |
762 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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|
| T |
31727139 |
atgaagaggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttgggggaagaatgccaaggtaggtttattagttaatttttct |
31727238 |
T |
|
| Q |
763 |
ctgccacaataattaagccctacttgccatttgttatatatttttactctttatttcgagagattagtcctaacagtttgaatatttttctacacaaatg |
862 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| |||| |
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|
| T |
31727239 |
ctgccacagtaattaagccctacttgccatttgttatatatttttactc--------------ttattcctaacagtttgaaattttttctacacgaatg |
31727324 |
T |
|
| Q |
863 |
ttgcaggtgcaggttcggatactttcacgtggtcaacaatgattatacacattggcaacaatatgcaatcggtggaagttcgtccccaactattttcagt |
962 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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|
| T |
31727325 |
ttgcagatgcaggttcggatactttcatgtggtgaacaatgattacacacattggcaacaatatgcaatcggtggaagttcgtcccgaactatttttagt |
31727424 |
T |
|
| Q |
963 |
caaggcaatagatttctagctccagatgatgatg |
996 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
31727425 |
caaggcaatagatttctagctccagatgatgatg |
31727458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 198 - 371
Target Start/End: Original strand, 39075588 - 39075761
Alignment:
| Q |
198 |
ctgtgaatcctaagccaggaacattaagacatgctgttatccaacaagagcctttatggatcattttcaagcatgacatggtgatcaaactaaagatgga |
297 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||| |||||| ||| |||| || || ||||| || ||||||| ||||||||| || || || || || |
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|
| T |
39075588 |
ctgtgaatccaaagccaggaacattaagatatggtgttattcaagaagaaccattgtggataatcttcaagcgtgacatggttattaagcttaaacaaga |
39075687 |
T |
|
| Q |
298 |
tcttctcatgaactctttcaaaacaattgatggtagaggtgtaaatgtacacattgctgaaggaccatgtatta |
371 |
Q |
| |
|
|| | ||||| |||||||||||||||||||||||||| |||||| |||||||||| ||||| ||||||| |
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|
| T |
39075688 |
gctaatgatgaattctttcaaaacaattgatggtagaggaacaaatgtgcacattgctggtggaccttgtatta |
39075761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 569 - 658
Target Start/End: Original strand, 39075959 - 39076048
Alignment:
| Q |
569 |
attgatgttgttcatggatcaacggctgttactatttctaataattatatgacacgtcataacaaagttatgctctttggtcatagtgat |
658 |
Q |
| |
|
||||||||| |||||||||| || ||| |||||||||||||||||| ||||| | |||||| || |||||||| || |||||||||||| |
|
|
| T |
39075959 |
attgatgttattcatggatctacagctattactatttctaataatttcatgactcatcataataaggttatgcttttgggtcatagtgat |
39076048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 34288724 - 34288693
Alignment:
| Q |
305 |
atgaactctttcaaaacaattgatggtagagg |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
34288724 |
atgaactctttcaaaacaattgatggtagagg |
34288693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 5e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 521 - 740
Target Start/End: Complemental strand, 7593472 - 7593253
Alignment:
| Q |
521 |
catatttgggtggatcattgttccttgtcaaattgttttgacggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatatga |
620 |
Q |
| |
|
||||||||| | ||||||||||| ||||| |||||| ||| ||| | ||||||||| | |||||||| | ||| |||||||||| ||||| ||||||| |
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|
| T |
7593472 |
catatttggattgatcattgttctttgtctaattgtcgtgatggtcttattgatgttatacatggatctaatgctattactatttcaaataactatatga |
7593373 |
T |
|
| Q |
621 |
cacgtcataacaaagttatgctctttggtcatagtgattcctatgaaggggacaaaaatatgcaagctactatagcttttaaccattttggagaagggct |
720 |
Q |
| |
|
| | |||| ||||||||||||| || || ||||||||||| ||| | ||||| | ||||||| |||||| |||||||| |||||||| |||||||| |
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|
| T |
7593372 |
ctcatcatgacaaagttatgcttttgggacatagtgattcttatacacaagacaaggacatgcaagttactattgcttttaatcattttggtgaagggct |
7593273 |
T |
|
| Q |
721 |
tgggggaagaatgccaaggt |
740 |
Q |
| |
|
|| |||||||||||||| |
|
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| T |
7593272 |
tgtccaaagaatgccaaggt |
7593253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 7593940 - 7593834
Alignment:
| Q |
56 |
ccaattgatgattgttggagatgtgaccccaattgggaaaataaccgcaagagactagcagaatgtgctattgggttcggtagacgtgcaattggaggta |
155 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || ||||| | |||||||| || ||||| ||||| || || | | ||||||||| |||| |
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|
| T |
7593940 |
ccaattgatgattgttggagatgtgacccaaattgggagaacaaccgacaaagactagctgattgtgcaattggatttggaaaagatgcaattggtggta |
7593841 |
T |
|
| Q |
156 |
aagatgg |
162 |
Q |
| |
|
|| |||| |
|
|
| T |
7593840 |
aaaatgg |
7593834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 520 - 740
Target Start/End: Original strand, 43131344 - 43131564
Alignment:
| Q |
520 |
tcatatttgggtggatcattgttccttgtcaaattgttttgacggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatatg |
619 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| || ||| ||| ||||||||||||| | ||||||| || || || |||| || ||||| ||||||||| |
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|
| T |
43131344 |
tcatgtttgggtggatcattgttctttgtctaactgtaatgatggtttgattgatgctattcatgggtccactgcaattaccatctctaacaattatatg |
43131443 |
T |
|
| Q |
620 |
acacgtcataacaaagttatgctctttggtcatagtgattcctatgaaggggacaaaaatatgcaagctactatagcttttaaccattttggagaagggc |
719 |
Q |
| |
|
|| | ||| | ||||||||||| || |||||||||||| | ||| ||||| || ||||||| |||||| |||||||| || ||||| ||||| | |
|
|
| T |
43131444 |
actcaccatgataaagttatgcttttgggtcatagtgatacttatactcaagacaagaacatgcaagttactattgcttttaatcactttggtgaaggcc |
43131543 |
T |
|
| Q |
720 |
ttgggggaagaatgccaaggt |
740 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
43131544 |
ttgttcaaagaatgccaaggt |
43131564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 43130877 - 43130958
Alignment:
| Q |
56 |
ccaattgatgattgttggagatgtgaccccaattgggaaaataaccgcaagagactagcagaatgtgctattgggttcggta |
137 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||| ||| | | || |||||||| ||||| ||||||||||||| |
|
|
| T |
43130877 |
ccaattgatgattgttggagatgtgacccaaactgggaaaaaaacagacaaaggctagcagattgtgcaattgggttcggta |
43130958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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