View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18556_low_10 (Length: 327)

Name: NF18556_low_10

Description: NF18556

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18556_low_10

[»] chr7 (2 HSPs)

Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 137; E-Value: 2e-71

Query Start/End: Original strand, 19 - 159

Target Start/End: Original strand, 30874212 - 30874352

Alignment:

Q	19	aagcccttcatggttattgttgttgtttccatcttggtcttgactctcatcatgaacttctaggtcagggcgttgaaggcgatgaacaaagtgttgtgat	118	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30874212	aagcccttcatggttattgttgttgtttccatcttggtcttgactctcatcatgaacttctaggtcaggacgttgaaggcgatgaacaaagtgttgtgat	30874311	T

Q	119	gctgaacccaagtctatgccggccatatactcaaagttttc	159	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30874312	gctgaacccaagtctatgccggccatatactcaaagttttc	30874352	T

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Target: chr7; HSP #2

Raw Score: 54; E-Value: 5e-22

Query Start/End: Original strand, 239 - 313

Target Start/End: Original strand, 30874432 - 30874506

Alignment:

Q	239	gaacaattaaattatatgtaaacaggaattataaannnnnnnatagaaaagaaagtattagatttaggagtgtcc	313	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30874432	gaacaattaaattatatgtaaacaggaattataaaattttttatagaaaagaaagtattagatttaggagtgtcc	30874506	T

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