View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18556_low_12 (Length: 287)
Name: NF18556_low_12
Description: NF18556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18556_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 1191022 - 1191104
Alignment:
| Q |
143 |
taccataatttaaaaggaaggtacaagatctaagttgctatacagctccttaccaaataataatgaagaatctagtaattctc |
225 |
Q |
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| T |
1191022 |
taccagaatttaaaaggaaggtacaagatctaagttgctatacagctccttaccaaataataatgaagaatctagtaattctc |
1191104 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 6692320 - 6692374
Alignment:
| Q |
42 |
attctataaaattcataaaagccgcatatataaatgtgtgtgtcggtgtatgtgt |
96 |
Q |
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| T |
6692320 |
attctgtaaaattcataaaagccgcatacataaatgtgtgtatcagtgcatgtgt |
6692374 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 24222440 - 24222365
Alignment:
| Q |
149 |
aatttaaaaggaaggtacaagatctaagttgctatacagctccttaccaaataataatgaagaatctagtaattct |
224 |
Q |
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| T |
24222440 |
aatttaaaaggatgttacaagacccaggttgctagatagctacttacaaaataagaacgaagaatctagtaattct |
24222365 |
T |
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