View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18556_low_14 (Length: 246)
Name: NF18556_low_14
Description: NF18556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18556_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 8574047 - 8574257
Alignment:
| Q |
4 |
ctcaatctcgaattcaacctatcatgtctcaaaccattcctacccaagaccttgaatggcaagactttgcaatgatcaacgaaactccatcttctacaac |
103 |
Q |
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| T |
8574047 |
ctcaatctcgaattcaacctatcatgtctcaaaccattcctacccaagaccttgaatggcaagactttgcaatgatcaacgaaactccatcttctactac |
8574146 |
T |
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| Q |
104 |
tagccatagtagtgaagaaagtaatggtaacaggattcctatacttccagaagctgatgggtaagtccttttaatgtcttaacatgagttgtattatgtt |
203 |
Q |
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| T |
8574147 |
tagccatagtagtgaagaaagtagtggtaacaggattcctatacttccagaagctgatgggtaagtccttttaatgtcttaacatgagttgtattatgtt |
8574246 |
T |
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| Q |
204 |
tttataattaa |
214 |
Q |
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||||||||||| |
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| T |
8574247 |
tttataattaa |
8574257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 173
Target Start/End: Original strand, 8604449 - 8604576
Alignment:
| Q |
46 |
cccaagaccttgaatggcaagactttgcaatgatcaacgaaactccatcttctacaactagccatagtagtgaagaaagtaatggtaacaggattcctat |
145 |
Q |
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|||||| |||| | ||| |||| ||| ||||| |||||||||| ||||||||||| |||| |||| | ||||||| |||||||| |||| || ||| | |
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| T |
8604449 |
cccaagtccttcattggaaagaatttccaatggtcaacgaaacaccatcttctactactaaccatgttcgtgaagagagtaatgggaacaaaatcccttt |
8604548 |
T |
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| Q |
146 |
acttccagaagctgatgggtaagtcctt |
173 |
Q |
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| T |
8604549 |
acgaccagaaggtgatgggtgagtcctt |
8604576 |
T |
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