View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18556_low_17 (Length: 230)
Name: NF18556_low_17
Description: NF18556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18556_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 36005174 - 36004955
Alignment:
| Q |
1 |
caatcgaccaaaccactatgtattcataatttcaacttgaattgctaactaagtcatcaactttgtttgttattataataatctttcactgatttttgtt |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36005174 |
caatcgaccaaaccacaatgtattcataatttcaacttgaattgctatctaattcatcaactttgtttgttattataataatctttcactgatttttgtt |
36005075 |
T |
|
| Q |
101 |
attttgccaaatcattttct--tcatctaattcttacttttcatccccgg----nnnnnnnnnnnnnngagtgtaaggttgtgattactgcaaggcatta |
194 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36005074 |
attttgccaaatcattttcttgtcatctaattcttacttttcatccccggttttttgttttttttttttagtgtaaggttgtgattactgcaaggcatta |
36004975 |
T |
|
| Q |
195 |
cttacaatggccatgcaact |
214 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
36004974 |
cttacaatggccatgcaact |
36004955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 214
Target Start/End: Complemental strand, 36025850 - 36025716
Alignment:
| Q |
81 |
atctttcactgatttttgttattttgccaaatcattttctt--catctaattcttacttttcatccccggnnnnnnnnnnnnnngagtgtaaggttgtga |
178 |
Q |
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|||||||||||||||||| || |||||||||| |||||||| ||||| ||||||||||||||||||| | |||||||||||||| |
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| T |
36025850 |
atctttcactgatttttgatagtttgccaaataattttcttgtcatctgattcttacttttcatccccagtttttgttttttta-agtgtaaggttgtgg |
36025752 |
T |
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| Q |
179 |
ttactgcaaggcattacttacaatggccatgcaact |
214 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
36025751 |
ttactgcaaggcattacttacaatggccatgcaact |
36025716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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