View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18556_low_18 (Length: 228)
Name: NF18556_low_18
Description: NF18556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18556_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 52709278 - 52709493
Alignment:
| Q |
1 |
taaaaataatatataagcttaagtgatatgtttgagcataggg----ctgctgcaacttcattttctaaagaatttgaatcgaaaaattaaagctcaggt |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52709278 |
taaaaataatatataagcttaagtgatatgtttgagcatagggggggctgctgcaacttcattttctaaagaatttgaatcgaaaaattaaagctcaggt |
52709377 |
T |
|
| Q |
97 |
cattcgtggcttttttacgatagtttgtttgattcgcaccatatggcttttttcataaacaaatcaagatcttatatcaaaaattgataaataaagagta |
196 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52709378 |
cattcgtgggttttttacgatagtttgtttgattcgcaccatatggcttttttcataaacaaatcaagatcttatatcaaaaattgataaataaagagta |
52709477 |
T |
|
| Q |
197 |
aagaagacgtcattat |
212 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
52709478 |
aagaagacgtcattat |
52709493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 26398833 - 26398718
Alignment:
| Q |
8 |
aatatataagcttaagtgatatgtttgagcatagggctgctgcaacttcattttctaaagaatttgaatcgaaaaattaaagctcaggtcattcgtggct |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
26398833 |
aatacataagcttaagtgatatgtttgagcatagggctttggcaacttcattttctaaagaatttgaattgaaaaattaaagctcaggtcattcgtaaat |
26398734 |
T |
|
| Q |
108 |
tttttacgatagtttg |
123 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
26398733 |
tttttacgatagtttg |
26398718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University